RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USE1	YGL098W	YNK1	P36010	153 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	TUL1	P36096	758 aa		3.12	□□□□□ -1.91
USE1	YGL098W	APL3	P38065	1025 aa		3.12	□□□□□ -1.91
USE1	YGL098W	LDH1	P38139	375 aa		3.12	□□□□□ -1.91
USE1	YGL098W	ERT1	P38140	529 aa		3.12	□□□□□ -1.91
USE1	YGL098W	TCM62	P38228	572 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	FTH1	P38310	465 aa		3.12	□□□□□ -1.91
USE1	YGL098W	ATG12	P38316	186 aa		3.12	□□□□□ -1.91
USE1	YGL098W	SHG1	P38337	142 aa		3.12	□□□□□ -1.91
USE1	YGL098W	YHR054C	P38780	354 aa		3.12	□□□□□ -1.91
USE1	YGL098W	GEP4	P38812	185 aa		3.12	□□□□□ -1.91
USE1	YGL098W	SUR2	P38992	349 aa		3.12	□□□□□ -1.91
USE1	YGL098W	FMP52	P40008	231 aa		3.12	□□□□□ -1.91
USE1	YGL098W	RGI1	P40043	161 aa	Predicted RBP	3.12	□□□□□ -1.91
USE1	YGL098W	BUR6	P40096	142 aa		3.12	□□□□□ -1.91
USE1	YGL098W	VRG4	P40107	337 aa		3.12	□□□□□ -1.91
USE1	YGL098W	NTA1	P40354	457 aa		3.12	□□□□□ -1.91
USE1	YGL098W	POG1	P40473	351 aa		3.12	□□□□□ -1.91
USE1	YGL098W	CFD1	P40558	293 aa		3.12	□□□□□ -1.91
USE1	YGL098W	GLC8	P41818	229 aa		3.12	□□□□□ -1.91
USE1	YGL098W	NSE4	P43124	402 aa		3.12	□□□□□ -1.91
USE1	YGL098W	GYP8	P43570	497 aa		3.12	□□□□□ -1.91
USE1	YGL098W	CHA4	P43634	648 aa		3.12	□□□□□ -1.91
USE1	YGL098W	PMT4	P46971	762 aa		3.12	□□□□□ -1.91
USE1	YGL098W	MRX5	P47007	382 aa		3.12	□□□□□ -1.91
USE1	YGL098W	AIM22	P47051	409 aa		3.12	□□□□□ -1.91
USE1	YGL098W	MPS3	P47069	682 aa		3.12	□□□□□ -1.91
USE1	YGL098W	ACF4	P47129	309 aa		3.12	□□□□□ -1.91
USE1	YGL098W	MCM22	P47167	239 aa		3.12	□□□□□ -1.91
USE1	YGL098W	VPS62	P53285	467 aa		3.12	□□□□□ -1.91
USE1	YGL098W	SSU72	P53538	206 aa	Predicted RBP	3.12	□□□□□ -1.91
USE1	YGL098W	BRE5	P53741	515 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	YAF9	P53930	226 aa		3.12	□□□□□ -1.91
USE1	YGL098W	ERV25	P54837	211 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	PEX13	P80667	386 aa		3.12	□□□□□ -1.91
USE1	YGL098W	KIN4	Q01919	800 aa		3.12	□□□□□ -1.91
USE1	YGL098W	ROD1	Q02805	837 aa		3.12	□□□□□ -1.91
USE1	YGL098W	RLI1	Q03195	608 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	EAR1	Q03212	550 aa		3.12	□□□□□ -1.91
USE1	YGL098W	CAC2	Q04199	468 aa		3.12	□□□□□ -1.91
USE1	YGL098W	YMR034C	Q05131	434 aa	Predicted RBP	3.12	□□□□□ -1.91
USE1	YGL098W	PAL1	Q05518	499 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	RTT103	Q05543	409 aa		3.12	□□□□□ -1.91
USE1	YGL098W	BOP2	Q06150	570 aa		3.12	□□□□□ -1.91
USE1	YGL098W	WHI4	Q07655	649 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	GRC3	Q07845	632 aa		3.12	□□□□□ -1.91
USE1	YGL098W	YOL131W	Q08270	108 aa		3.12	□□□□□ -1.91
USE1	YGL098W	HFI1	Q12060	488 aa		3.12	□□□□□ -1.91
USE1	YGL098W	SLM3	Q12093	417 aa		3.12	□□□□□ -1.91
USE1	YGL098W	NYV1	Q12255	253 aa		3.12	□□□□□ -1.91
USE1	YGL098W	YLR126C	Q12288	251 aa		3.12	□□□□□ -1.91
USE1	YGL098W	SFG1	Q12507	346 aa		3.12	□□□□□ -1.91
USE1	YGL098W	EFG1	Q3E705	233 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	YPL119C-A	Q3E751	87 aa		3.12	□□□□□ -1.91
USE1	YGL098W	FAS2	P19097	1887 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	AAC1	P04710	309 aa		3.11	□□□□□ -1.91
USE1	YGL098W	ALG7	P07286	448 aa		3.11	□□□□□ -1.91
USE1	YGL098W	FUM1	P08417	488 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	ERR1	P0CX10	437 aa		3.11	□□□□□ -1.91
USE1	YGL098W	ERR2	P0CX11	437 aa		3.11	□□□□□ -1.91
USE1	YGL098W	RPL4A	P10664	362 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	HOM3	P10869	527 aa		3.11	□□□□□ -1.91
USE1	YGL098W	REV1	P12689	985 aa		3.11	□□□□□ -1.91
USE1	YGL098W	MTF1	P14908	341 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	PET9	P18239	318 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	SNF6	P18888	332 aa		3.11	□□□□□ -1.91
USE1	YGL098W	DBR1	P24309	405 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	CTS1	P29029	562 aa		3.11	□□□□□ -1.91
USE1	YGL098W	BEM1	P29366	551 aa		3.11	□□□□□ -1.91
USE1	YGL098W	FAA1	P30624	700 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	SNC1	P31109	117 aa		3.11	□□□□□ -1.91
USE1	YGL098W	DEG1	P31115	442 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	SYN8	P31377	255 aa		3.11	□□□□□ -1.91
USE1	YGL098W	ARP2	P32381	391 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	SUR1	P33300	382 aa		3.11	□□□□□ -1.91
USE1	YGL098W	YKL162C	P36052	402 aa		3.11	□□□□□ -1.91
USE1	YGL098W	POL12	P38121	705 aa	Predicted RBP	3.11	□□□□□ -1.91
USE1	YGL098W	FLR1	P38124	548 aa		3.11	□□□□□ -1.91
USE1	YGL098W	ROT2	P38138	954 aa		3.11	□□□□□ -1.91
USE1	YGL098W	YBL029W	P38201	376 aa		3.11	□□□□□ -1.91
USE1	YGL098W	BIT2	P38346	545 aa		3.11	□□□□□ -1.91
USE1	YGL098W	RCK1	P38622	512 aa		3.11	□□□□□ -1.91
USE1	YGL098W	PCM1	P38628	557 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	PAN5	P38787	379 aa		3.11	□□□□□ -1.91
USE1	YGL098W	ERV46	P39727	415 aa		3.11	□□□□□ -1.91
USE1	YGL098W	NPR2	P39923	615 aa		3.11	□□□□□ -1.91
USE1	YGL098W	KHA1	P40309	873 aa		3.11	□□□□□ -1.91
USE1	YGL098W	ATM1	P40416	690 aa		3.11	□□□□□ -1.91
USE1	YGL098W	YIL166C	P40445	542 aa		3.11	□□□□□ -1.91
USE1	YGL098W	YIL108W	P40483	696 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	YIL024C	P40543	189 aa		3.11	□□□□□ -1.91
USE1	YGL098W	GLR1	P41921	483 aa	Known RBP	3.11	□□□□□ -1.91
USE1	YGL098W	ERR3	P42222	437 aa		3.11	□□□□□ -1.91
USE1	YGL098W	SLS1	P42900	643 aa		3.11	□□□□□ -1.91
USE1	YGL098W	AGX1	P43567	385 aa		3.11	□□□□□ -1.91
USE1	YGL098W	ATG18	P43601	500 aa		3.11	□□□□□ -1.91
USE1	YGL098W	LOH1	P47055	219 aa		3.11	□□□□□ -1.91
USE1	YGL098W	TAH11	P47112	604 aa		3.11	□□□□□ -1.91
USE1	YGL098W	MTR3	P48240	250 aa	Predicted RBP	3.11	□□□□□ -1.91
USE1	YGL098W	RPL4B	P49626	362 aa	Known RBP	3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 28.8 ms