RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	MPS1	P54199	764 aa		4.98	□□□□□ -1.61
UBP9	YER098W	MAK10	Q02197	733 aa		4.98	□□□□□ -1.61
UBP9	YER098W	YDR222W	Q04925	415 aa		4.98	□□□□□ -1.61
UBP9	YER098W	RPN5	Q12250	445 aa	Known RBP	4.98	□□□□□ -1.61
UBP9	YER098W	CTF3	Q12748	733 aa		4.98	□□□□□ -1.61
UBP9	YER098W	TPK2	P06245	380 aa		4.97	□□□□□ -1.61
UBP9	YER098W	PDA1	P16387	420 aa	Known RBP	4.97	□□□□□ -1.61
UBP9	YER098W	CKA2	P19454	339 aa		4.97	□□□□□ -1.61
UBP9	YER098W	PPQ1	P32945	549 aa		4.97	□□□□□ -1.61
UBP9	YER098W	PTC1	P35182	281 aa		4.97	□□□□□ -1.61
UBP9	YER098W	ECM13	P38195	257 aa		4.97	□□□□□ -1.61
UBP9	YER098W	ATG7	P38862	630 aa		4.97	□□□□□ -1.61
UBP9	YER098W	YIL054W	P40524	105 aa		4.97	□□□□□ -1.61
UBP9	YER098W	DLD2	P46681	530 aa	Known RBP	4.97	□□□□□ -1.61
UBP9	YER098W	HSH155	P49955	971 aa	Known RBP	4.97	□□□□□ -1.61
UBP9	YER098W	TPN1	P53099	579 aa		4.97	□□□□□ -1.61
UBP9	YER098W	YML053C	Q04978	212 aa		4.97	□□□□□ -1.61
UBP9	YER098W	RBS1	Q05672	457 aa	Known RBP	4.97	□□□□□ -1.61
UBP9	YER098W	VTA1	Q06263	330 aa		4.97	□□□□□ -1.61
UBP9	YER098W	SAM4	Q08985	325 aa	Known RBP	4.97	□□□□□ -1.61
UBP9	YER098W	SKS1	Q12505	502 aa		4.97	□□□□□ -1.61
UBP9	YER098W	MRP2	P10663	115 aa	Predicted RBP	4.97	□□□□□ -1.61
UBP9	YER098W	STE4	P18851	423 aa		4.97	□□□□□ -1.61
UBP9	YER098W	RPL24B	P24000	155 aa	Known RBP	4.97	□□□□□ -1.61
UBP9	YER098W	RNP1	P32385	249 aa		4.97	□□□□□ -1.61
UBP9	YER098W	LOT5	P34234	306 aa		4.97	□□□□□ -1.61
UBP9	YER098W	RPF2	P36160	344 aa	Known RBP	4.97	□□□□□ -1.61
UBP9	YER098W	RRF1	P38771	230 aa		4.97	□□□□□ -1.61
UBP9	YER098W	YHR054C	P38780	354 aa		4.97	□□□□□ -1.61
UBP9	YER098W	RCY1	P39531	840 aa		4.97	□□□□□ -1.61
UBP9	YER098W	EDC3	P39998	551 aa	Known RBP	4.97	□□□□□ -1.61
UBP9	YER098W	AGP3	P43548	558 aa		4.97	□□□□□ -1.61
UBP9	YER098W	YFR018C	P43599	363 aa		4.97	□□□□□ -1.61
UBP9	YER098W	AIM23	P47015	356 aa		4.97	□□□□□ -1.61
UBP9	YER098W	HOC1	P47124	396 aa		4.97	□□□□□ -1.61
UBP9	YER098W	PNG1	Q02890	363 aa		4.97	□□□□□ -1.61
UBP9	YER098W	KAP120	Q02932	1032 aa		4.97	□□□□□ -1.61
UBP9	YER098W	BNA7	Q04066	261 aa		4.97	□□□□□ -1.61
UBP9	YER098W	PRM6	Q04705	352 aa		4.97	□□□□□ -1.61
UBP9	YER098W	GAL83	Q04739	417 aa		4.97	□□□□□ -1.61
UBP9	YER098W	YNG1	Q08465	219 aa		4.97	□□□□□ -1.61
UBP9	YER098W	DSE3	Q08729	430 aa		4.97	□□□□□ -1.61
UBP9	YER098W	FEX1	Q08913	375 aa		4.97	□□□□□ -1.61
UBP9	YER098W	CAR1	P00812	333 aa	Known RBP	4.96	□□□□□ -1.62
UBP9	YER098W	TPK3	P05986	398 aa		4.96	□□□□□ -1.62
UBP9	YER098W	FBA1	P14540	359 aa	Known RBP	4.96	□□□□□ -1.62
UBP9	YER098W	KGD1	P20967	1014 aa	Known RBP	4.96	□□□□□ -1.62
UBP9	YER098W	KRE2	P27809	442 aa		4.96	□□□□□ -1.62
UBP9	YER098W	THI2	P38141	450 aa		4.96	□□□□□ -1.62
UBP9	YER098W	AIM3	P38266	947 aa	Known RBP	4.96	□□□□□ -1.62
UBP9	YER098W	PHM8	P40025	321 aa		4.96	□□□□□ -1.62
UBP9	YER098W	YKE4	P40544	346 aa		4.96	□□□□□ -1.62
UBP9	YER098W	RPL6A	Q02326	176 aa	Known RBP	4.96	□□□□□ -1.62
UBP9	YER098W	ARG7	Q04728	441 aa		4.96	□□□□□ -1.62
UBP9	YER098W	THI3	Q07471	609 aa		4.96	□□□□□ -1.62
UBP9	YER098W	TGS1	Q12052	315 aa		4.96	□□□□□ -1.62
UBP9	YER098W	YDR018C	Q12185	396 aa		4.96	□□□□□ -1.62
UBP9	YER098W	ARG81	P05085	880 aa		4.95	□□□□□ -1.62
UBP9	YER098W	SNF3	P10870	884 aa		4.95	□□□□□ -1.62
UBP9	YER098W	RVS161	P25343	265 aa	Known RBP	4.95	□□□□□ -1.62
UBP9	YER098W	PMT2	P31382	759 aa		4.95	□□□□□ -1.62
UBP9	YER098W	UTR4	P32626	227 aa		4.95	□□□□□ -1.62
UBP9	YER098W	CYM1	P32898	989 aa		4.95	□□□□□ -1.62
UBP9	YER098W	SIF2	P38262	535 aa		4.95	□□□□□ -1.62
UBP9	YER098W	GND1	P38720	489 aa	Known RBP	4.95	□□□□□ -1.62
UBP9	YER098W	YHR045W	P38775	560 aa		4.95	□□□□□ -1.62
UBP9	YER098W	YHK8	P38776	514 aa		4.95	□□□□□ -1.62
UBP9	YER098W	IPI1	P38803	334 aa	Predicted RBP	4.95	□□□□□ -1.62
UBP9	YER098W	GIP4	P39732	760 aa		4.95	□□□□□ -1.62
UBP9	YER098W	YAT2	P40017	923 aa		4.95	□□□□□ -1.62
UBP9	YER098W	DIA3	P52290	468 aa		4.95	□□□□□ -1.62
UBP9	YER098W	MND1	P53102	219 aa		4.95	□□□□□ -1.62
UBP9	YER098W	SEG1	Q04279	960 aa		4.95	□□□□□ -1.62
UBP9	YER098W	GMC2	Q06201	188 aa		4.95	□□□□□ -1.62
UBP9	YER098W	APC5	Q08683	685 aa		4.95	□□□□□ -1.62
UBP9	YER098W	CLP1	Q08685	445 aa	Predicted RBP	4.95	□□□□□ -1.62
UBP9	YER098W	MUM3	Q08750	479 aa		4.95	□□□□□ -1.62
UBP9	YER098W	FEX2	Q08991	375 aa		4.95	□□□□□ -1.62
UBP9	YER098W	MDM32	Q12171	622 aa		4.95	□□□□□ -1.62
UBP9	YER098W	MED11	Q99278	115 aa		4.95	□□□□□ -1.62
UBP9	YER098W	AAC1	P04710	309 aa		4.95	□□□□□ -1.62
UBP9	YER098W	DAL2	P25335	343 aa		4.95	□□□□□ -1.62
UBP9	YER098W	ATG22	P25568	528 aa		4.95	□□□□□ -1.62
UBP9	YER098W	CIN8	P27895	1000 aa		4.95	□□□□□ -1.62
UBP9	YER098W	LAC1	P28496	418 aa		4.95	□□□□□ -1.62
UBP9	YER098W	RGT1	P32862	1170 aa		4.95	□□□□□ -1.62
UBP9	YER098W	MIA40	P36046	403 aa		4.95	□□□□□ -1.62
UBP9	YER098W	RSM22	P36056	628 aa		4.95	□□□□□ -1.62
UBP9	YER098W	ANR2	P36090	516 aa	Predicted RBP	4.95	□□□□□ -1.62
UBP9	YER098W	MTW1	P39731	289 aa		4.95	□□□□□ -1.62
UBP9	YER098W	MNP1	P53163	194 aa	Predicted RBP	4.95	□□□□□ -1.62
UBP9	YER098W	YNL033W	P53964	284 aa		4.95	□□□□□ -1.62
UBP9	YER098W	YNL019C	P53975	284 aa		4.95	□□□□□ -1.62
UBP9	YER098W	ELP3	Q02908	557 aa	Known RBP	4.95	□□□□□ -1.62
UBP9	YER098W	SCS7	Q03529	384 aa		4.95	□□□□□ -1.62
UBP9	YER098W	RRN11	Q04712	507 aa		4.95	□□□□□ -1.62
UBP9	YER098W	KAP95	Q06142	861 aa	Known RBP	4.95	□□□□□ -1.62
UBP9	YER098W	ATP14	Q12349	124 aa		4.95	□□□□□ -1.62
UBP9	YER098W	Q0010	Q9ZZX9	128 aa		4.95	□□□□□ -1.62
UBP9	YER098W	HXK2	P04807	486 aa	Known RBP	4.94	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms