RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CCDC174Q6PII3 467 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 PIGWQ7Z7B1 504 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 EXOC3L1Q86VI1 746 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 MB21D2Q8IYB1 491 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 NME8Q8N427 588 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 PDCD7Q8N8D1 485 aaKnown RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 KRI1Q8N9T8 703 aaKnown RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 ISCA1Q9BUE6 129 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 POLR3CQ9BUI4 534 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 TRPV5Q9NQA5 729 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 GPHNQ9NQX3 736 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 TXLNGQ9NUQ3 528 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 NKX1-2Q9UD57 310 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 SERTAD1Q9UHV2 236 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 LNPEPQ9UIQ6 1025 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 CROTQ9UKG9 612 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 MYH1P12882 1939 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 DYTNA2CJ06 578 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 GNA14O95837 355 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 TPBGLP0DKB5 382 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 IFNAR2P48551 515 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 CLCN2P51788 898 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 KRT31Q15323 416 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 DDB1Q16531 1140 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 ZNF572Q7Z3I7 529 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 SAMD3Q8N6K7 520 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 ASAP3Q8TDY4 903 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 FBXO41Q8TF61 875 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 CASKIN2Q8WXE0 1202 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 PIGBQ92521 554 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 IFT43Q96FT9 208 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 CCDC42Q96M95 316 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 ETNK2Q9NVF9 386 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 BTG4Q9NY30 223 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 TACC3Q9Y6A5 838 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 RAD21O60216 631 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 KIF23Q02241 960 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 BNIP1Q12981 228 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 TRIM28Q13263 835 aaKnown RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 ZNF662Q6ZS27 426 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 VSIG1Q86XK7 387 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 ATP8B4Q8TF62 1192 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 MAML3Q96JK9 1138 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 SMC6Q96SB8 1091 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 CCDC113Q9H0I3 377 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 PFDN4Q9NQP4 134 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 EHD2Q9NZN4 543 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 TSKSQ9UJT2 592 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 ITM2BQ9Y287 266 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 ABCC12Q96J65 1359 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 NUTM2BA6NNL0 878 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 NUTM2EB1AL46 878 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 NDUFB5O43674 189 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 ETS2P15036 469 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 ARPC4P59998 168 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 PDE1BQ01064 536 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 LMNB2Q03252 620 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 SULT2A1Q06520 285 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 CYLC2Q14093 348 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 TRIM29Q14134 588 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 RCN1Q15293 331 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 INAQ16352 499 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 FOXB2Q5VYV0 432 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 INTS8Q75QN2 995 aaKnown RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 SCUBE1Q8IWY4 988 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 LRRC43Q8N309 656 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 SREK1Q8WXA9 508 aaKnown RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 DDX12PQ92771 950 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 FERMT2Q96AC1 680 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 PBKQ96KB5 322 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 EIF2AQ9BY44 585 aaKnown RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 FAM114A2Q9NRY5 505 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 RABL2BQ9UNT1 228 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 A0A087WZG4 1122 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 TTC26A0AVF1 554 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 TLDC2A0PJX2 215 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 LDHAP00338 332 aaKnown RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 ASLP04424 464 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 SARSP49591 514 aaKnown RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 EVA1CP58658 441 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 CYP27A1Q02318 531 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 CUL1Q13616 776 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 PTPAQ15257 358 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 TMEM259Q4ZIN3 620 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 ST13P4Q8IZP2 240 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 PIAS4Q8N2W9 510 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 OSBP2Q969R2 916 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 ZNF317Q96PQ6 595 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 MAP3K14Q99558 947 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 PLA2G12BQ9BX93 195 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 PUS3Q9BZE2 481 aaKnown RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 STRN4Q9NRL3 753 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 ARHGEF38Q9NXL2 777 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 KLHL14Q9P2G3 628 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 RASAL2Q9UJF2 1139 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 PNMA2Q9UL42 364 aa7.4□□□□□ -1.22
SCN1A-213ENST00000636759 IQSEC3Q9UPP2 1182 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-213ENST00000636759 MYH8P13535 1937 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 HTR3EA5X5Y0 456 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms