RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-225ENST00000636214 VPS54Q9P1Q0 977 aa20.34■□□□□ 0.85
PNKP-225ENST00000636214 PCDHA2Q9Y5H9 948 aa20.34■□□□□ 0.85
PNKP-225ENST00000636214 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.33■□□□□ 0.85
PNKP-225ENST00000636214 ATG7O95352 703 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 KRT76Q01546 638 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 PTPROQ16827 1216 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 PRR16Q569H4 304 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 SP7Q8TDD2 431 aaPredicted RBP20.33■□□□□ 0.85
PNKP-225ENST00000636214 RASGRP4Q8TDF6 673 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 ADAMTS19Q8TE59 1207 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 IL17RAQ96F46 866 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 C17orf80Q9BSJ5 609 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 C22orf23Q9BZE7 217 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 TM6SF1Q9BZW5 370 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 SUGCTQ9HAC7 445 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 SAMM50Q9Y512 469 aa20.33■□□□□ 0.85
PNKP-225ENST00000636214 BRWD1Q9NSI6 2320 aa20.33■□□□□ 0.84
PNKP-225ENST00000636214 TNFRSF10AO00220 468 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 LPXNO60711 386 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 CCNE2O96020 404 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 PSAPP07602 524 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 EVCP57679 992 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 NTRK3Q16288 839 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 ZNF746Q6NUN9 644 aaPredicted RBP20.32■□□□□ 0.84
PNKP-225ENST00000636214 MTHFD1LQ6UB35 978 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 ABHD15Q6UXT9 468 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 SMAP1Q8IYB5 467 aaPredicted RBP20.32■□□□□ 0.84
PNKP-225ENST00000636214 NME8Q8N427 588 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 ATP8B4Q8TF62 1192 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 TRAPPC12Q8WVT3 735 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 HLA-CQ95604 372 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 UIMC1Q96RL1 719 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 FTHL17Q9BXU8 183 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 OSBPL7Q9BZF2 842 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 PDRG1Q9NUG6 133 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 SQORQ9Y6N5 450 aa20.32■□□□□ 0.84
PNKP-225ENST00000636214 IGLV3-22A0A075B6J6 115 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 SMIM35A0A1B0GVV1 85 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 DEXIO95424 95 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 TMEM62Q0P6H9 643 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 PAK2Q13177 524 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 TOB2Q14106 344 aaPredicted RBP20.31■□□□□ 0.84
PNKP-225ENST00000636214 ZNF484Q5JVG2 852 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 SWSAP1Q6NVH7 229 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 CCDC60Q8IWA6 550 aaPredicted RBP20.31■□□□□ 0.84
PNKP-225ENST00000636214 FIBCD1Q8N539 461 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 CRYGNQ8WXF5 182 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 ZBTB10Q96DT7 871 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 ZNF274Q96GC6 653 aaPredicted RBP20.31■□□□□ 0.84
PNKP-225ENST00000636214 UHRF1Q96T88 793 aaPredicted RBP20.31■□□□□ 0.84
PNKP-225ENST00000636214 UPF3BQ9BZI7 483 aaKnown RBP20.31■□□□□ 0.84
PNKP-225ENST00000636214 PPP4R2Q9NY27 417 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 RWDD3Q9Y3V2 267 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 PCDHA10Q9Y5I2 948 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 COL1A2P08123 1366 aa20.31■□□□□ 0.84
PNKP-225ENST00000636214 IGKV6D-21A0A0A0MT36 114 aa20.3■□□□□ 0.84
PNKP-225ENST00000636214 KLRC1P26715 233 aa20.3■□□□□ 0.84
PNKP-225ENST00000636214 CD52P31358 61 aa20.3■□□□□ 0.84
PNKP-225ENST00000636214 CIITAP33076 1130 aa20.3■□□□□ 0.84
PNKP-225ENST00000636214 TFF2Q03403 129 aa20.3■□□□□ 0.84
PNKP-225ENST00000636214 STK3Q13188 491 aa20.3■□□□□ 0.84
PNKP-225ENST00000636214 EPC2Q52LR7 807 aa20.3■□□□□ 0.84
PNKP-225ENST00000636214 CELF4Q9BZC1 486 aaKnown RBP20.3■□□□□ 0.84
PNKP-225ENST00000636214 GINS2Q9Y248 185 aa20.3■□□□□ 0.84
PNKP-225ENST00000636214 NLRC5Q86WI3 1866 aa20.3■□□□□ 0.84
PNKP-225ENST00000636214 TCF20Q9UGU0 1960 aaKnown RBP20.3■□□□□ 0.84
PNKP-225ENST00000636214 LOXHD1Q8IVV2 1947 aa20.29■□□□□ 0.84
PNKP-225ENST00000636214 EVPLQ92817 2033 aa20.29■□□□□ 0.84
PNKP-225ENST00000636214 RBAK-RBAKDNI3L0D1 243 aa20.29■□□□□ 0.84
PNKP-225ENST00000636214 DHX15O43143 795 aaKnown RBP20.29■□□□□ 0.84
PNKP-225ENST00000636214 CDKL5O76039 1030 aa20.29■□□□□ 0.84
PNKP-225ENST00000636214 ODR4Q5SWX8 454 aa20.29■□□□□ 0.84
PNKP-225ENST00000636214 TMEM192Q8IY95 271 aa20.29■□□□□ 0.84
PNKP-225ENST00000636214 BBXQ8WY36 941 aaPredicted RBP20.29■□□□□ 0.84
PNKP-225ENST00000636214 FAM167AQ96KS9 214 aa20.29■□□□□ 0.84
PNKP-225ENST00000636214 CEP131Q9UPN4 1083 aa20.29■□□□□ 0.84
PNKP-225ENST00000636214 TTC3P53804 2025 aa20.29■□□□□ 0.84
PNKP-225ENST00000636214 REV3LO60673 3130 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 WDR64B1ANS9 1081 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 ENPP3O14638 875 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 GAS7O60861 476 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 STAG3L1P0CL83 205 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 CTNNB1P35222 781 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 USP11P51784 963 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 GPM6BQ13491 265 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 TIGD5Q53EQ6 642 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 TRMT1LQ7Z2T5 733 aaKnown RBP20.28■□□□□ 0.84
PNKP-225ENST00000636214 FAM177A1Q8N128 213 aaPredicted RBP20.28■□□□□ 0.84
PNKP-225ENST00000636214 LRFN2Q9ULH4 789 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 PCDHA4Q9UN74 947 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 COL4A6Q14031 1691 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 RALGAPA2Q2PPJ7 1873 aa20.28■□□□□ 0.84
PNKP-225ENST00000636214 ADGRA3Q8IWK6 1321 aa20.27■□□□□ 0.84
PNKP-225ENST00000636214 IGSF9BQ9UPX0 1349 aa20.27■□□□□ 0.84
PNKP-225ENST00000636214 KDM3AQ9Y4C1 1321 aa20.27■□□□□ 0.84
PNKP-225ENST00000636214 SPTBN5Q9NRC6 3674 aaKnown RBP20.27■□□□□ 0.84
PNKP-225ENST00000636214 ADAMTS3O15072 1205 aa20.27■□□□□ 0.84
PNKP-225ENST00000636214 XBP1P17861 261 aa20.27■□□□□ 0.84
PNKP-225ENST00000636214 BTG3Q14201 252 aaPredicted RBP20.27■□□□□ 0.84
PNKP-225ENST00000636214 ERICH6BQ5W0A0 696 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms