RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 PAGE5Q96GU1 130 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 MAGEF1Q9HAY2 307 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 SYNRGQ9UMZ2 1314 aa22.99■■□□□ 1.27
CLN3-245ENST00000636172 CTAGE5O15320 804 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 DKC1O60832 514 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLN3-245ENST00000636172 PPFIA4O75335 1185 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 STBD1O95210 358 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 LGALS2P05162 132 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 ATP4AP20648 1035 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 STAT5BP51692 787 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 STAMQ92783 540 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 UPF3AQ9H1J1 476 aaKnown RBP22.98■■□□□ 1.27
CLN3-245ENST00000636172 AZI2Q9H6S1 392 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 KBTBD4Q9NVX7 518 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 DDX20Q9UHI6 824 aaKnown RBP22.98■■□□□ 1.27
CLN3-245ENST00000636172 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.98■■□□□ 1.27
CLN3-245ENST00000636172 CAPN15O75808 1086 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 EYA4O95677 639 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 PLA2G4BP0C869 781 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 YWHABP31946 246 aaKnown RBP22.98■■□□□ 1.27
CLN3-245ENST00000636172 GJA9P57773 515 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 MDM2Q00987 491 aaPredicted RBP22.98■■□□□ 1.27
CLN3-245ENST00000636172 DGKDQ16760 1214 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 SLC9C1Q4G0N8 1177 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 KANK3Q6NY19 840 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 PLPPR4Q7Z2D5 763 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 ELOA2Q8IYF1 753 aaPredicted RBP22.98■■□□□ 1.27
CLN3-245ENST00000636172 GLG1Q92896 1179 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 SYAP1Q96A49 352 aaPredicted RBP22.98■■□□□ 1.27
CLN3-245ENST00000636172 BHMT2Q9H2M3 363 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 TNMDQ9H2S6 317 aa22.98■■□□□ 1.27
CLN3-245ENST00000636172 HMX1Q9NP08 348 aaPredicted RBP22.98■■□□□ 1.27
CLN3-245ENST00000636172 TMEM150BA6NC51 233 aa22.97■■□□□ 1.27
CLN3-245ENST00000636172 MYADML2A6NDP7 307 aa22.97■■□□□ 1.27
CLN3-245ENST00000636172 ZNF286BP0CG31 522 aa22.97■■□□□ 1.27
CLN3-245ENST00000636172 AFMP43652 599 aa22.97■■□□□ 1.27
CLN3-245ENST00000636172 CPT1AP50416 773 aa22.97■■□□□ 1.27
CLN3-245ENST00000636172 SLC12A3P55017 1021 aa22.97■■□□□ 1.27
CLN3-245ENST00000636172 DHX8Q14562 1220 aaKnown RBP22.97■■□□□ 1.27
CLN3-245ENST00000636172 FSCN1Q16658 493 aaKnown RBP22.97■■□□□ 1.27
CLN3-245ENST00000636172 SV2BQ7L1I2 683 aa22.97■■□□□ 1.27
CLN3-245ENST00000636172 SMARCAD1Q9H4L7 1026 aa22.97■■□□□ 1.27
CLN3-245ENST00000636172 FRMPD3Q5JV73 1810 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 ARID2Q68CP9 1835 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 PGK1P00558 417 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 OATP04181 439 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 PRR29P0C7W0 189 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 XRCC6P12956 609 aaKnown RBP eCLIP22.96■■□□□ 1.27
CLN3-245ENST00000636172 NKX3-2P78367 333 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 BEX3Q00994 111 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 POSTNQ15063 836 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 ANO5Q75V66 913 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 TRMT1LQ7Z2T5 733 aaKnown RBP22.96■■□□□ 1.27
CLN3-245ENST00000636172 SYT2Q8N9I0 419 aaPredicted RBP22.96■■□□□ 1.27
CLN3-245ENST00000636172 C16orf70Q9BSU1 422 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 XPNPEP3Q9NQH7 507 aa22.96■■□□□ 1.27
CLN3-245ENST00000636172 DBR1Q9UK59 544 aaKnown RBP22.96■■□□□ 1.27
CLN3-245ENST00000636172 ADAMTS4O75173 837 aa22.95■■□□□ 1.26
CLN3-245ENST00000636172 SSBP05455 408 aaKnown RBP eCLIP22.95■■□□□ 1.26
CLN3-245ENST00000636172 C6orf222P0C671 652 aaPredicted RBP22.95■■□□□ 1.26
CLN3-245ENST00000636172 CASP1P29466 404 aa22.95■■□□□ 1.26
CLN3-245ENST00000636172 PNOCQ13519 176 aa22.95■■□□□ 1.26
CLN3-245ENST00000636172 XKR3Q5GH77 459 aa22.95■■□□□ 1.26
CLN3-245ENST00000636172 FBXO46Q6PJ61 603 aaPredicted RBP22.95■■□□□ 1.26
CLN3-245ENST00000636172 CKAP2LQ8IYA6 745 aa22.95■■□□□ 1.26
CLN3-245ENST00000636172 CCDC34Q96HJ3 373 aa22.95■■□□□ 1.26
CLN3-245ENST00000636172 ANKEF1Q9NU02 776 aa22.95■■□□□ 1.26
CLN3-245ENST00000636172 MARK3P27448 753 aa22.94■■□□□ 1.26
CLN3-245ENST00000636172 RARRES1P49788 294 aa22.94■■□□□ 1.26
CLN3-245ENST00000636172 SLC26A2P50443 739 aa22.94■■□□□ 1.26
CLN3-245ENST00000636172 BRDTQ58F21 947 aaPredicted RBP22.94■■□□□ 1.26
CLN3-245ENST00000636172 PLA2G4FQ68DD2 849 aa22.94■■□□□ 1.26
CLN3-245ENST00000636172 ERCC4Q92889 916 aaPredicted RBP22.94■■□□□ 1.26
CLN3-245ENST00000636172 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.94■■□□□ 1.26
CLN3-245ENST00000636172 UNC93B1Q9H1C4 597 aa22.94■■□□□ 1.26
CLN3-245ENST00000636172 SPC25Q9HBM1 224 aa22.94■■□□□ 1.26
CLN3-245ENST00000636172 SEPT9Q9UHD8 586 aaPredicted RBP22.94■■□□□ 1.26
CLN3-245ENST00000636172 HOOK1Q9UJC3 728 aaKnown RBP22.94■■□□□ 1.26
CLN3-245ENST00000636172 MYMKA6NI61 221 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 MSCO60682 206 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 PLCB4Q15147 1175 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 PKN2Q16513 984 aaKnown RBP22.93■■□□□ 1.26
CLN3-245ENST00000636172 LHX8Q68G74 356 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 RBM43Q6ZSC3 357 aaKnown RBP22.93■■□□□ 1.26
CLN3-245ENST00000636172 GPBP1Q86WP2 473 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 ATP8B4Q8TF62 1192 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 FAM167AQ96KS9 214 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 SH2D3AQ9BRG2 576 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 BLZF1Q9H2G9 400 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 ERAP1Q9NZ08 941 aa22.93■■□□□ 1.26
CLN3-245ENST00000636172 ARHGEF35A5YM69 484 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 GTPBP6O43824 516 aaPredicted RBP22.92■■□□□ 1.26
CLN3-245ENST00000636172 CYP11B2P19099 503 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 NPEPPSP55786 919 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 AMPD3Q01432 767 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 CUL4BQ13620 913 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 OTUD6AQ7L8S5 288 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 RUSC1Q9BVN2 902 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 TRIM9Q9C026 710 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 H3BRB1 525 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms