RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 VAV3Q9UKW4 847 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 PCDHA12Q9UN75 941 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 MTMR6Q9Y217 621 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 PCDHB6Q9Y5E3 794 aa20.35■□□□□ 0.85
CLN3-239ENST00000628023 C17orf102A2RUQ5 167 aa20.34■□□□□ 0.85
CLN3-239ENST00000628023 PDIA4P13667 645 aaKnown RBP20.34■□□□□ 0.85
CLN3-239ENST00000628023 SLC26A2P50443 739 aa20.34■□□□□ 0.85
CLN3-239ENST00000628023 PPFIA1Q13136 1202 aa20.34■□□□□ 0.85
CLN3-239ENST00000628023 GRIN2CQ14957 1233 aa20.34■□□□□ 0.85
CLN3-239ENST00000628023 RAB30Q15771 203 aa20.34■□□□□ 0.85
CLN3-239ENST00000628023 PTGISQ16647 500 aa20.34■□□□□ 0.85
CLN3-239ENST00000628023 TNPO1Q92973 898 aaKnown RBP20.34■□□□□ 0.85
CLN3-239ENST00000628023 TTC12Q9H892 705 aaPredicted RBP20.34■□□□□ 0.85
CLN3-239ENST00000628023 IGKV6D-21A0A0A0MT36 114 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 GNAT1P11488 350 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 RESTQ13127 1097 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 TMEM266Q2M3C6 531 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 GDF6Q6KF10 455 aaPredicted RBP20.33■□□□□ 0.85
CLN3-239ENST00000628023 OTOP2Q7RTS6 562 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 AFAP1L1Q8TED9 768 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 ATP6V0A1Q93050 837 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 MTMR9Q96QG7 549 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 GAS2L1Q99501 681 aaPredicted RBP20.33■□□□□ 0.85
CLN3-239ENST00000628023 PBX4Q9BYU1 374 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 RNPEPQ9H4A4 650 aa20.33■□□□□ 0.85
CLN3-239ENST00000628023 UMODL1Q5DID0 1318 aa20.32■□□□□ 0.84
CLN3-239ENST00000628023 POTEB3A0JP26 581 aa20.32■□□□□ 0.84
CLN3-239ENST00000628023 GRXCR1A8MXD5 290 aa20.32■□□□□ 0.84
CLN3-239ENST00000628023 PTGDRQ13258 359 aa20.32■□□□□ 0.84
CLN3-239ENST00000628023 FOXD4L5Q5VV16 416 aaPredicted RBP20.32■□□□□ 0.84
CLN3-239ENST00000628023 POTEBQ6S5H4 581 aa20.32■□□□□ 0.84
CLN3-239ENST00000628023 TRMT1LQ7Z2T5 733 aaKnown RBP20.32■□□□□ 0.84
CLN3-239ENST00000628023 FOXD4L4Q8WXT5 416 aaPredicted RBP20.32■□□□□ 0.84
CLN3-239ENST00000628023 COL25A1Q9BXS0 654 aaPredicted RBP20.32■□□□□ 0.84
CLN3-239ENST00000628023 ZSCAN16Q9H4T2 348 aaPredicted RBP20.32■□□□□ 0.84
CLN3-239ENST00000628023 NRCAMQ92823 1304 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 IGSF9BQ9UPX0 1349 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 UNC80Q8N2C7 3258 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 EML1O00423 815 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 LAD1O00515 517 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 PFKMP08237 780 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 CYP2C9P11712 490 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 ANP32AP39687 249 aaKnown RBP20.31■□□□□ 0.84
CLN3-239ENST00000628023 IGBP1P78318 339 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 PLCB4Q15147 1175 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 B3GNT9Q6UX72 402 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 BANK1Q8NDB2 785 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 ATP8B4Q8TF62 1192 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 WNT8AQ9H1J5 351 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.31■□□□□ 0.84
CLN3-239ENST00000628023 SETD4Q9NVD3 440 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 MAFBQ9Y5Q3 323 aaPredicted RBP20.31■□□□□ 0.84
CLN3-239ENST00000628023 SLC4A7Q9Y6M7 1214 aa20.31■□□□□ 0.84
CLN3-239ENST00000628023 PBX2P40425 430 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 TECP42680 631 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 ZNF200P98182 395 aaPredicted RBP20.3■□□□□ 0.84
CLN3-239ENST00000628023 PRKCEQ02156 737 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 GRIK4Q16099 956 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 UGCGQ16739 394 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 RETREG2Q8NC44 543 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 LMBR1Q8WVP7 490 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 FAM167AQ96KS9 214 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 SLC28A3Q9HAS3 691 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 CXXC1Q9P0U4 656 aaPredicted RBP20.3■□□□□ 0.84
CLN3-239ENST00000628023 DAXXQ9UER7 740 aaPredicted RBP20.3■□□□□ 0.84
CLN3-239ENST00000628023 CEP131Q9UPN4 1083 aa20.3■□□□□ 0.84
CLN3-239ENST00000628023 MYO9BQ13459 2157 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 MYH9P35579 1960 aaKnown RBP20.29■□□□□ 0.84
CLN3-239ENST00000628023 POTEMA6NI47 508 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 ZBBXA8MT70 800 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 HBP1O60381 514 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 DKC1O60832 514 aaKnown RBP eCLIP20.29■□□□□ 0.84
CLN3-239ENST00000628023 OATP04181 439 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 INSRRP14616 1297 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 SPIRE1Q08AE8 756 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 EPHA7Q15375 998 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 CCDC155Q8N6L0 562 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 BBXQ8WY36 941 aaPredicted RBP20.29■□□□□ 0.84
CLN3-239ENST00000628023 SCLYQ96I15 445 aa20.29■□□□□ 0.84
CLN3-239ENST00000628023 KAT6AQ92794 2004 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 RRN3P2A6NIE6 340 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 BMP15O95972 392 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 P4HBP07237 508 aaKnown RBP20.28■□□□□ 0.84
CLN3-239ENST00000628023 ZSCAN22P10073 491 aaPredicted RBP20.28■□□□□ 0.84
CLN3-239ENST00000628023 ACTN1P12814 892 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 RFC2P35250 354 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 QARSP47897 775 aaKnown RBP20.28■□□□□ 0.84
CLN3-239ENST00000628023 PSMC5P62195 406 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 CYP4A11Q02928 519 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 BFSP2Q13515 415 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 FAM173BQ6P4H8 233 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 DTHD1Q6ZMT9 781 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 C4orf32Q8N8J7 132 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 ERMNQ8TAM6 284 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 LXNQ9BS40 222 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 RAB34Q9BZG1 259 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 NRBP2Q9NSY0 501 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 SEPT9Q9UHD8 586 aaPredicted RBP20.28■□□□□ 0.84
CLN3-239ENST00000628023 TUBE1Q9UJT0 475 aa20.28■□□□□ 0.84
CLN3-239ENST00000628023 PITPNM1O00562 1244 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms