RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 MYCNP04198 464 aaPredicted RBP9.57□□□□□ -0.88
VCL-206ENST00000623461 SCP2P22307 547 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 CUL4BQ13620 913 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 STAT4Q14765 748 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 SLC44A4Q53GD3 710 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 MAEAQ7L5Y9 396 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 SH2D3CQ8N5H7 860 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 EEF2KMTQ96G04 330 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 CEP19Q96LK0 163 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 SAYSD1Q9NPB0 183 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 EHD2Q9NZN4 543 aa9.57□□□□□ -0.88
VCL-206ENST00000623461 CDHR2Q9BYE9 1310 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 ASXL2Q76L83 1435 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 ECE1P42892 770 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 RCAN1P53805 252 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 KSR1Q8IVT5 923 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 STAG2Q8N3U4 1231 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 DPF2Q92785 391 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 GPKOWQ92917 476 aaPredicted RBP eCLIP9.56□□□□□ -0.88
VCL-206ENST00000623461 ZIM3Q96PE6 472 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 TTC1Q99614 292 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 ESYT3A0FGR9 886 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 TOM1O60784 492 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 PLCG1P19174 1290 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 PGM1P36871 562 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 ARL4CP56559 192 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 GFPT1Q06210 699 aaPredicted RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 LAMB3Q13751 1172 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 MTF1Q14872 753 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 BSPRYQ5W0U4 402 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 UNC13DQ70J99 1090 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 TRIM50Q86XT4 487 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 TC2NQ8N9U0 490 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 EMILIN3Q9NT22 766 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 KRT1P04264 644 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 SYDE1Q6ZW31 735 aaPredicted RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 REXO1L1PQ8IX06 675 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 ELOA2Q8IYF1 753 aaPredicted RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 L1RE1Q9UN81 338 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 SMG5Q9UPR3 1016 aaKnown RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 KIAA1024Q9UPX6 916 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 PLEKHG2Q9H7P9 1386 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 MED14O60244 1454 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 RFC4P35249 363 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 ADD2P35612 726 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 PRCPP42785 496 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 SLC1A4P43007 532 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 PAPOLAP51003 745 aaKnown RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 NAIF1Q69YI7 327 aaPredicted RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 DACT3Q96B18 629 aaPredicted RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 RMDN2Q96LZ7 410 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 ROPN1BQ9BZX4 212 aaPredicted RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 ROPN1Q9HAT0 212 aaPredicted RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 TMOD4Q9NZQ9 345 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 GHRP10912 638 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 TMED10P49755 219 aaKnown RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 COPS2P61201 443 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 TRMT10CQ7L0Y3 403 aaKnown RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 RAB44Q7Z6P3 723 aaPredicted RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 IL17REQ8NFR9 667 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 RNF34Q969K3 372 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 RNPC3Q96LT9 517 aaKnown RBP9.56□□□□□ -0.88
VCL-206ENST00000623461 FAM210AQ96ND0 272 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 IL2RBP14784 551 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 ANXA13P27216 316 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 ZBTB10Q96DT7 871 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 EYA3Q99504 573 aa9.56□□□□□ -0.88
VCL-206ENST00000623461 NCK2O43639 380 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 MARK3P27448 753 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 TUBE1Q9UJT0 475 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 ECM2O94769 699 aaPredicted RBP9.55□□□□□ -0.88
VCL-206ENST00000623461 TJP3O95049 919 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 GJA10Q969M2 543 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 TTC17Q96AE7 1141 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 SNF8Q96H20 258 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 PPCSQ9HAB8 311 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 DLGAP2Q9P1A6 1054 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 ZFATQ9P243 1243 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 KDM6BO15054 1643 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 BCORL1Q5H9F3 1711 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 F8W031 263 aaPredicted RBP9.55□□□□□ -0.88
VCL-206ENST00000623461 CTSWP56202 376 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 HIC1Q14526 733 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 TMEM206Q9H813 350 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 GDAQ9Y2T3 454 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 ATP7BP35670 1465 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 PVALEFA0A1B0GWK0 134 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 PHF20L1A8MW92 1017 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 CFLARO15519 480 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 ANP32DO95626 131 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 FOSP01100 380 aaPredicted RBP9.55□□□□□ -0.88
VCL-206ENST00000623461 PRR29P0C7W0 189 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 LRRC41Q15345 812 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 RCSD1Q6JBY9 416 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 RAPH1Q70E73 1250 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 POLR3CQ9BUI4 534 aaPredicted RBP9.55□□□□□ -0.88
VCL-206ENST00000623461 WNT8AQ9H1J5 351 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 SNX5Q9Y5X3 404 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 EIF4E1BA6NMX2 242 aaKnown RBP9.55□□□□□ -0.88
VCL-206ENST00000623461 GCP02774 474 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms