RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PSMC6P62333 389 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 KIAA0753Q2KHM9 967 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 AXDND1Q5T1B0 1012 aaPredicted RBP22.11■■□□□ 1.13
UPF3A-211ENST00000618700 HAUS3Q68CZ6 603 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 NECAB2Q7Z6G3 386 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 SLC43A3Q8NBI5 491 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 KIF12Q96FN5 646 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 CLIC6Q96NY7 704 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 RNPEPQ9H4A4 650 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 TUFT1Q9NNX1 390 aa22.11■■□□□ 1.13
UPF3A-211ENST00000618700 A0A0U1RQG5 324 aaPredicted RBP22.1■■□□□ 1.13
UPF3A-211ENST00000618700 MED24O75448 989 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 SLITRK3O94933 977 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 LYPLA2O95372 231 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 RPA1P27694 616 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 CDC25AP30304 524 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 PRKCEQ02156 737 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 CYP4A11Q02928 519 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 PLCB4Q15147 1175 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 NBPF20Q3BBV1 942 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 SNX29Q8TEQ0 813 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 ATP8B4Q8TF62 1192 aa22.1■■□□□ 1.13
UPF3A-211ENST00000618700 SENP6Q9GZR1 1112 aaPredicted RBP22.1■■□□□ 1.13
UPF3A-211ENST00000618700 MYH9P35579 1960 aaKnown RBP22.1■■□□□ 1.13
UPF3A-211ENST00000618700 CUTAO60888 179 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 STBD1O95210 358 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 MUTP22033 750 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 HOXC8P31273 242 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 CLCN6P51797 869 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 ITGA7Q13683 1181 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 CTTNQ14247 550 aaKnown RBP22.09■■□□□ 1.13
UPF3A-211ENST00000618700 SNX17Q15036 470 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 KRT79Q5XKE5 535 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 NFRKBQ6P4R8 1299 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 SESTD1Q86VW0 696 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 CATSPER3Q86XQ3 398 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 C4orf19Q8IY42 314 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 FAM167AQ96KS9 214 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 ZSWIM4Q9H7M6 989 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 GDPD2Q9HCC8 539 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 PCDHA7Q9UN72 937 aa22.09■■□□□ 1.13
UPF3A-211ENST00000618700 MKI67P46013 3256 aaKnown RBP22.09■■□□□ 1.13
UPF3A-211ENST00000618700 POTEB3A0JP26 581 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 SLC26A4O43511 780 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 DKC1O60832 514 aaKnown RBP eCLIP22.08■■□□□ 1.13
UPF3A-211ENST00000618700 OATP04181 439 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 CCT6AP40227 531 aaKnown RBP22.08■■□□□ 1.13
UPF3A-211ENST00000618700 ME1P48163 572 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 ECM1Q16610 540 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 HYIQ5T013 277 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 C1orf53Q5VUE5 145 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 POTEBQ6S5H4 581 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 SLC39A5Q6ZMH5 540 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 CLEC17AQ6ZS10 378 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 USP49Q70CQ1 688 aa22.08■■□□□ 1.13
UPF3A-211ENST00000618700 KDM3AQ9Y4C1 1321 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 ARVCFO00192 962 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 SMIM10L2AP0DMW4 78 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 SMIM10L2BP0DMW5 78 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 PYGBP11216 843 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 CDK7P50613 346 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 PTPN11Q06124 597 aaPredicted RBP22.07■■□□□ 1.12
UPF3A-211ENST00000618700 XKR3Q5GH77 459 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 POTEGQ6S5H5 508 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 CABP7Q86V35 215 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 TPH2Q8IWU9 490 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 CKAP2LQ8IYA6 745 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 PPP1R13LQ8WUF5 828 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 BBXQ8WY36 941 aaPredicted RBP22.07■■□□□ 1.12
UPF3A-211ENST00000618700 SYMPKQ92797 1274 aaKnown RBP22.07■■□□□ 1.12
UPF3A-211ENST00000618700 VTI1AQ96AJ9 217 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 EPSTI1Q96J88 318 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 SEZ6LQ9BYH1 1024 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 CCSER1Q9C0I3 900 aa22.07■■□□□ 1.12
UPF3A-211ENST00000618700 GALR2O43603 387 aaPredicted RBP22.06■■□□□ 1.12
UPF3A-211ENST00000618700 HBP1O60381 514 aa22.06■■□□□ 1.12
UPF3A-211ENST00000618700 CHMP4BP1P59074 171 aa22.06■■□□□ 1.12
UPF3A-211ENST00000618700 SPECC1Q5M775 1068 aa22.06■■□□□ 1.12
UPF3A-211ENST00000618700 SHC4Q6S5L8 630 aa22.06■■□□□ 1.12
UPF3A-211ENST00000618700 ANO5Q75V66 913 aa22.06■■□□□ 1.12
UPF3A-211ENST00000618700 C7orf31Q8N865 590 aa22.06■■□□□ 1.12
UPF3A-211ENST00000618700 HDAC6Q9UBN7 1215 aa22.06■■□□□ 1.12
UPF3A-211ENST00000618700 GTF2IRD1Q9UHL9 959 aa22.06■■□□□ 1.12
UPF3A-211ENST00000618700 TRPC6Q9Y210 931 aa22.06■■□□□ 1.12
UPF3A-211ENST00000618700 COL1A2P08123 1366 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 ZBTB42B2RXF5 422 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 MAP3K13O43283 966 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 UBA7P41226 1012 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 ATN1P54259 1190 aaPredicted RBP22.05■■□□□ 1.12
UPF3A-211ENST00000618700 ADAM17P78536 824 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 GRB10Q13322 594 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 HIC1Q14526 733 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 TMEM119Q4V9L6 283 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 PNMA5Q96PV4 448 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 NRCAMQ92823 1304 aa22.05■■□□□ 1.12
UPF3A-211ENST00000618700 TMEM150BA6NC51 233 aa22.04■■□□□ 1.12
UPF3A-211ENST00000618700 INSRRP14616 1297 aa22.04■■□□□ 1.12
UPF3A-211ENST00000618700 YWHABP31946 246 aaKnown RBP22.04■■□□□ 1.12
UPF3A-211ENST00000618700 PPFIA1Q13136 1202 aa22.04■■□□□ 1.12
UPF3A-211ENST00000618700 TARBP2Q15633 366 aaKnown RBP22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms