RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RAD51AP2Q09MP3 1159 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 CELF3Q5SZQ8 465 aaKnown RBP15.87■□□□□ 0.13
USP39-220ENST00000613444 KLHL10Q6JEL2 608 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 SWSAP1Q6NVH7 229 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 CCDC47Q96A33 483 aaKnown RBP15.87■□□□□ 0.13
USP39-220ENST00000613444 VTA1Q9NP79 307 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 GJD2Q9UKL4 321 aa15.87■□□□□ 0.13
USP39-220ENST00000613444 TMEM150BA6NC51 233 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 ECM2O94769 699 aaPredicted RBP15.86■□□□□ 0.13
USP39-220ENST00000613444 ALDH1A1P00352 501 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 MIS18BP1Q6P0N0 1132 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 ANO5Q75V66 913 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 PDLIM2Q96JY6 352 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 PCYT2Q99447 389 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 TINF2Q9BSI4 451 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 SLC39A2Q9NP94 309 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 RSPH10B2B2RC85 870 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 IGHA2P01877 340 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 RSPH10BP0C881 870 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 PSMD2Q13200 908 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 CCDC65Q8IXS2 484 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 GLIS3Q8NEA6 775 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 SCFD2Q8WU76 684 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 COPS5Q92905 334 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 FGFBP2Q9BYJ0 223 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 GTPBP4Q9BZE4 634 aaKnown RBP15.86■□□□□ 0.13
USP39-220ENST00000613444 KCND2Q9NZV8 630 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 RWDD2AQ9UIY3 292 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 CTNND2Q9UQB3 1225 aa15.86■□□□□ 0.13
USP39-220ENST00000613444 MAFBQ9Y5Q3 323 aaPredicted RBP15.86■□□□□ 0.13
USP39-220ENST00000613444 TXNP10599 105 aaKnown RBP15.85■□□□□ 0.13
USP39-220ENST00000613444 ATP4AP20648 1035 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 PTGS1P23219 599 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 GUCY2CP25092 1073 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 TTLL4Q14679 1199 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 SARM1Q6SZW1 724 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 MSL3Q8N5Y2 521 aaKnown RBP15.85■□□□□ 0.13
USP39-220ENST00000613444 ATP6V0A1Q93050 837 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 ANKEF1Q9NU02 776 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 FANCLQ9NW38 375 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 FLRT1Q9NZU1 646 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 NFE2L3Q9Y4A8 694 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 ARHGEF35A5YM69 484 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 KRT18P05783 430 aaKnown RBP15.85■□□□□ 0.13
USP39-220ENST00000613444 ZNF18P17022 549 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 PMS1P54277 932 aaKnown RBP15.85■□□□□ 0.13
USP39-220ENST00000613444 STX17P56962 302 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 PAK1Q13153 545 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 HSDL1Q3SXM5 330 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 UTP14CQ5TAP6 766 aaKnown RBP15.85■□□□□ 0.13
USP39-220ENST00000613444 PADI6Q6TGC4 694 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 REM2Q8IYK8 340 aaPredicted RBP15.85■□□□□ 0.13
USP39-220ENST00000613444 NELFBQ8WX92 580 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 PPP1R9BQ96SB3 815 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 GPR20Q99678 358 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 SYNRGQ9UMZ2 1314 aa15.85■□□□□ 0.13
USP39-220ENST00000613444 CENPFP49454 3210 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 BACH1O14867 736 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 ADCY5O95622 1261 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 ZNF131P52739 623 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 MAPK7Q13164 816 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 FAM26FQ5R3K3 315 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 SPATA1Q5VX52 437 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 PLA2G4FQ68DD2 849 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 DAW1Q8N136 415 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 SH2D3AQ9BRG2 576 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 MLXIPQ9HAP2 919 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 POLD4Q9HCU8 107 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 SLC5A4Q9NY91 659 aa15.84■□□□□ 0.13
USP39-220ENST00000613444 ATP1A3P13637 1013 aa15.83■□□□□ 0.13
USP39-220ENST00000613444 NPEPPSP55786 919 aa15.83■□□□□ 0.13
USP39-220ENST00000613444 PRKCEQ02156 737 aa15.83■□□□□ 0.13
USP39-220ENST00000613444 ARHGAP1Q07960 439 aa15.83■□□□□ 0.13
USP39-220ENST00000613444 HERC4Q5GLZ8 1057 aaPredicted RBP15.83■□□□□ 0.13
USP39-220ENST00000613444 AFAP1L1Q8TED9 768 aa15.83■□□□□ 0.13
USP39-220ENST00000613444 SEPT1Q8WYJ6 367 aa15.83■□□□□ 0.13
USP39-220ENST00000613444 DHTKD1Q96HY7 919 aaPredicted RBP15.83■□□□□ 0.13
USP39-220ENST00000613444 ABHD16BQ9H3Z7 469 aa15.83■□□□□ 0.13
USP39-220ENST00000613444 ZNF302Q9NR11 478 aa15.83■□□□□ 0.13
USP39-220ENST00000613444 TRIM49BA6NDI0 452 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 TNPO2O14787 897 aaKnown RBP15.83■□□□□ 0.12
USP39-220ENST00000613444 DKC1O60832 514 aaKnown RBP eCLIP15.83■□□□□ 0.12
USP39-220ENST00000613444 ADCYAP1R1P41586 468 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 CAP1Q01518 475 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 GJC2Q5T442 439 aaPredicted RBP15.83■□□□□ 0.12
USP39-220ENST00000613444 TTI2Q6NXR4 508 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 SFR1Q86XK3 245 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 DHX37Q8IY37 1157 aaKnown RBP15.83■□□□□ 0.12
USP39-220ENST00000613444 GUF1Q8N442 669 aaKnown RBP15.83■□□□□ 0.12
USP39-220ENST00000613444 SOCS4Q8WXH5 440 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 FIZ1Q96SL8 496 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 CFHR5Q9BXR6 569 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 ARHGAP39Q9C0H5 1083 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 SAMSN1Q9NSI8 373 aaKnown RBP15.83■□□□□ 0.12
USP39-220ENST00000613444 ODF2LQ9ULJ1 636 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 THSD7BQ9C0I4 1608 aa15.83■□□□□ 0.12
USP39-220ENST00000613444 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.82■□□□□ 0.12
USP39-220ENST00000613444 PSMA7O14818 248 aa15.82■□□□□ 0.12
USP39-220ENST00000613444 LGR5O75473 907 aa15.82■□□□□ 0.12
USP39-220ENST00000613444 TCF7P36402 384 aaPredicted RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms