RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 H3BRB1 525 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 WNT7AO00755 349 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 TREHO43280 583 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 STX6O43752 255 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 BRD1O95696 1058 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 CYP3A4P08684 503 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 TGFB3P10600 412 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 ACTN1P12814 892 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 XBP1P17861 261 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 HOXC8P31273 242 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 CIITAP33076 1130 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 SREBF1P36956 1147 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 TOB1P50616 345 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-214ENST00000600840 RESTQ13127 1097 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 PTK7Q13308 1070 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 AP3B2Q13367 1082 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 JAKMIP3Q5VZ66 844 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 MCTP2Q6DN12 878 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 KCNV1Q6PIU1 500 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 POTEBQ6S5H4 581 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.94□□□□□ -0.822e-9■□□□□ 9.3
TRIM28-214ENST00000600840 SERINC5Q86VE9 423 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 PRSS33Q8NF86 280 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 PHOSPHO2Q8TCD6 241 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 BICD2Q8TD16 824 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 PGBD1Q96JS3 809 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 MBOAT7Q96N66 472 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 GPR20Q99678 358 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 KATNAL1Q9BW62 490 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 RNPEPQ9H4A4 650 aa9.94□□□□□ -0.82
TRIM28-214ENST00000600840 TUT1Q9H6E5 874 aaKnown RBP9.94□□□□□ -0.82
TRIM28-214ENST00000600840 GRXCR2A6NFK2 248 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 SMIM10L2AP0DMW4 78 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 SMIM10L2BP0DMW5 78 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 PDIA4P13667 645 aaKnown RBP9.93□□□□□ -0.82
TRIM28-214ENST00000600840 ITGB5P18084 799 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 PDCP20941 246 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 KRT2P35908 639 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 FOSBP53539 338 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 SP4Q02446 784 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 MKRN4PQ13434 485 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-214ENST00000600840 UTP14CQ5TAP6 766 aaKnown RBP9.93□□□□□ -0.82
TRIM28-214ENST00000600840 PCNX4Q63HM2 1172 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 FAM117BQ6P1L5 589 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 CNKSR3Q6P9H4 555 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 REXO1Q8N1G1 1221 aaKnown RBP9.93□□□□□ -0.82
TRIM28-214ENST00000600840 ANO3Q9BYT9 981 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 KCNH6Q9H252 994 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 SETD4Q9NVD3 440 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 KIF3AQ9Y496 699 aa9.93□□□□□ -0.82
TRIM28-214ENST00000600840 KAT6AQ92794 2004 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 ATG2AQ2TAZ0 1938 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 IGLV3-22A0A075B6J6 115 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 CYP3A7-CYP3A51PA0A087WV96 503 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 GSTTP1A0A1W2PQM5 241 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 MEIS1O00470 390 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 FIBPO43427 364 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 BAIAP3O94812 1187 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 KCNA2P16389 499 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 CYP3A7P24462 503 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 THPOP40225 353 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 USP11P51784 963 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 ADAM17P78536 824 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 IER5LQ5T953 404 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 XRRA1Q6P2D8 792 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 METTL7BQ6UX53 244 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 KRT25Q7Z3Z0 450 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 NOSTRINQ8IVI9 506 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 CCDC155Q8N6L0 562 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 DBF4BQ8NFT6 615 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 CYP2W1Q8TAV3 490 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 TBCKQ8TEA7 893 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 ATP6V0A1Q93050 837 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 LENG9Q96B70 501 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 LMCD1Q9NZU5 365 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 PKD2L1Q9P0L9 805 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 UBIAD1Q9Y5Z9 338 aa9.92□□□□□ -0.82
TRIM28-214ENST00000600840 KMT2EQ8IZD2 1858 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 C17orf102A2RUQ5 167 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 LINC01553A4QN01 128 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 RSPH10B2B2RC85 870 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 FAM86B1E9PN63 330 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 NOP56O00567 594 aaKnown RBP9.91□□□□□ -0.82
TRIM28-214ENST00000600840 LGR5O75473 907 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 STAM2O75886 525 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 CTSHP09668 335 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 FAM86B2P0C5J1 330 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 RSPH10BP0C881 870 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 ZSCAN22P10073 491 aaPredicted RBP9.91□□□□□ -0.82
TRIM28-214ENST00000600840 KCNJ6P48051 423 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 ERVK-21P61565 698 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 ARHGAP4P98171 946 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 ZP2Q05996 745 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 TRIM29Q14134 588 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 NEDD9Q14511 834 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 NONOQ15233 471 aaKnown RBP eCLIP9.91□□□□□ -0.82
TRIM28-214ENST00000600840 GNPTABQ3T906 1256 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 PPP4R3AQ6IN85 833 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 MOXD1Q6UVY6 613 aa9.91□□□□□ -0.82
TRIM28-214ENST00000600840 RUFY4Q6ZNE9 571 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms