RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TREHO43280 583 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 YEATS4O95619 227 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 MARK3P27448 753 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 RPA1P27694 616 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 QARSP47897 775 aaKnown RBP11.88□□□□□ -0.51
LIG1-210ENST00000596332 RTP1P59025 263 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 PSMC5P62195 406 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 NUCB2P80303 420 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 PTPN11Q06124 597 aaPredicted RBP11.88□□□□□ -0.51
LIG1-210ENST00000596332 GRB10Q13322 594 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 MKRN4PQ13434 485 aaPredicted RBP11.88□□□□□ -0.51
LIG1-210ENST00000596332 GPNMBQ14956 572 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 SPECC1Q5M775 1068 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 HYIQ5T013 277 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 ATL3Q6DD88 541 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 PDXDC2PQ6P474 469 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 TRAF7Q6Q0C0 670 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 DTHD1Q6ZMT9 781 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 C4orf19Q8IY42 314 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 LINC01465Q8N7H1 131 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 ATP8B4Q8TF62 1192 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 LEO1Q8WVC0 666 aaPredicted RBP11.88□□□□□ -0.51
LIG1-210ENST00000596332 LMBR1Q8WVP7 490 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 TRAPPC12Q8WVT3 735 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 TRIM43Q96BQ3 446 aaPredicted RBP11.88□□□□□ -0.51
LIG1-210ENST00000596332 SH2D3AQ9BRG2 576 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 NIFKQ9BYG3 293 aaKnown RBP11.88□□□□□ -0.51
LIG1-210ENST00000596332 OSBPL7Q9BZF2 842 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 CSRNP2Q9H175 543 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 PDLIM7Q9NR12 457 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 ERAP1Q9NZ08 941 aa11.88□□□□□ -0.51
LIG1-210ENST00000596332 A0A087X0B3 334 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 POTEB3A0JP26 581 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 SPTLC2O15270 562 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 PPP6R2O75170 966 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 CAPN15O75808 1086 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 BMP15O95972 392 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 SLC26A2P50443 739 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 NPEPPSP55786 919 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 PRKCEQ02156 737 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 CYP4A11Q02928 519 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 POTEBQ6S5H4 581 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 SHC4Q6S5L8 630 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 GLG1Q92896 1179 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 EPSTI1Q96J88 318 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 ZNF396Q96N95 335 aaPredicted RBP11.87□□□□□ -0.51
LIG1-210ENST00000596332 LXNQ9BS40 222 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 CHMP5Q9NZZ3 219 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 LRWD1Q9UFC0 647 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 TBX21Q9UL17 535 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 PCDHA7Q9UN72 937 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 SAMM50Q9Y512 469 aa11.87□□□□□ -0.51
LIG1-210ENST00000596332 IGKV6-21A0A0C4DH24 114 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 BACH1O14867 736 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 MARCH6O60337 910 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 HBP1O60381 514 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 OATP04181 439 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 GRIK4Q16099 956 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 XKR3Q5GH77 459 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 FAM160B1Q5W0V3 765 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 RUFY4Q6ZNE9 571 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 SERINC5Q86VE9 423 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 TPH2Q8IWU9 490 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 BBXQ8WY36 941 aaPredicted RBP11.86□□□□□ -0.51
LIG1-210ENST00000596332 VTI1AQ96AJ9 217 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 KATNAL1Q9BW62 490 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 SEZ6LQ9BYH1 1024 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 AZI2Q9H6S1 392 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 ZSWIM4Q9H7M6 989 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 TUFT1Q9NNX1 390 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 UMODL1Q5DID0 1318 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 NRCAMQ92823 1304 aa11.86□□□□□ -0.51
LIG1-210ENST00000596332 C17orf102A2RUQ5 167 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 PQBP1O60828 265 aaKnown RBP11.85□□□□□ -0.51
LIG1-210ENST00000596332 C22orf31O95567 290 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 CYP2C9P11712 490 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 LONP1P36776 959 aaKnown RBP11.85□□□□□ -0.51
LIG1-210ENST00000596332 RBL2Q08999 1139 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 DRP2Q13474 957 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 TMEM119Q4V9L6 283 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 NAALADL2Q58DX5 795 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 PLA2G4FQ68DD2 849 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 POTEGQ6S5H5 508 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 MTHFD1LQ6UB35 978 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 CLEC17AQ6ZS10 378 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 TRMT1LQ7Z2T5 733 aaKnown RBP11.85□□□□□ -0.51
LIG1-210ENST00000596332 C7orf31Q8N865 590 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 PIGOQ8TEQ8 1089 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 TNPO1Q92973 898 aaKnown RBP11.85□□□□□ -0.51
LIG1-210ENST00000596332 CCSER1Q9C0I3 900 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 GDPD2Q9HCC8 539 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 XPNPEP1Q9NQW7 623 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 BLOC1S4Q9NUP1 217 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 ZNF215Q9UL58 517 aaPredicted RBP11.85□□□□□ -0.51
LIG1-210ENST00000596332 CEP131Q9UPN4 1083 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 ATP11BQ9Y2G3 1177 aa11.85□□□□□ -0.51
LIG1-210ENST00000596332 DDX11L8A8MPP1 907 aa11.84□□□□□ -0.51
LIG1-210ENST00000596332 E9PMD0 336 aa11.84□□□□□ -0.51
LIG1-210ENST00000596332 KIAA0355O15063 1070 aa11.84□□□□□ -0.51
LIG1-210ENST00000596332 XRCC6P12956 609 aaKnown RBP eCLIP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms