RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 IER5Q5VY09 327 aa20.06■□□□□ 0.8
SHKBP1-204ENST00000594862 CCDC60Q8IWA6 550 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-204ENST00000594862 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.06■□□□□ 0.8
SHKBP1-204ENST00000594862 BBXQ8WY36 941 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-204ENST00000594862 MYLIPQ8WY64 445 aa20.06■□□□□ 0.8
SHKBP1-204ENST00000594862 UPF2Q9HAU5 1272 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-204ENST00000594862 LIMCH1Q9UPQ0 1083 aa20.06■□□□□ 0.8
SHKBP1-204ENST00000594862 SAMM50Q9Y512 469 aa20.06■□□□□ 0.8
SHKBP1-204ENST00000594862 PCDHA2Q9Y5H9 948 aa20.06■□□□□ 0.8
SHKBP1-204ENST00000594862 RABGGTBP53611 331 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 TRIM29Q14134 588 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 GRIN2CQ14957 1233 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 SWSAP1Q6NVH7 229 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 RUFY4Q6ZNE9 571 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 NEK8Q86SG6 692 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 CKAP2LQ8IYA6 745 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 NME8Q8N427 588 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 USP38Q8NB14 1042 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 DBF4BQ8NFT6 615 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 MBOAT7Q96N66 472 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 ZBED2Q9BTP6 218 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 KCNJ14Q9UNX9 436 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 MAFBQ9Y5Q3 323 aaPredicted RBP20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 SQORQ9Y6N5 450 aa20.05■□□□□ 0.8
SHKBP1-204ENST00000594862 IGSF9BQ9UPX0 1349 aa20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 MICAL3Q7RTP6 2002 aa20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 SMIM35A0A1B0GVV1 85 aa20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 TLL1O43897 1013 aa20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 MRPS6P82932 125 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 NECAB1Q8N987 351 aa20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 ZSCAN31Q96LW9 406 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 IFIH1Q9BYX4 1025 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 DISC1Q9NRI5 854 aa20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 MYH9P35579 1960 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-204ENST00000594862 GJB5O95377 273 aa20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 LARGE1O95461 756 aa20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 CA3P07451 260 aa20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 KRT2P35908 639 aa20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 INF2Q27J81 1249 aa20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 PPP4R3AQ6IN85 833 aa20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 NSUN7Q8NE18 718 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 MAFAQ8NHW3 353 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 DNAJB3Q8WWF6 145 aa20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 LLPHQ9BRT6 129 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 SH2B1Q9NRF2 756 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 DDX25Q9UHL0 483 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-204ENST00000594862 MYO9BQ13459 2157 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 PTPRSQ13332 1948 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 TDP2O95551 362 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 CHRNA1P02708 482 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 RBM25P49756 843 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 DEFB103AP81534 67 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 MGAT3Q09327 533 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 MKRN4PQ13434 485 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 LETM2Q2VYF4 491 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 MTHFD1LQ6UB35 978 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 TSHZ1Q6ZSZ6 1077 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 ZNF710Q8N1W2 664 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 FAM20AQ96MK3 541 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 RAD9AQ99638 391 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 FAM49AQ9H0Q0 323 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 GABBR1Q9UBS5 961 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 TRPV2Q9Y5S1 764 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 CDY2AQ9Y6F7 541 aa20.02■□□□□ 0.8
SHKBP1-204ENST00000594862 KDM3AQ9Y4C1 1321 aa20.02■□□□□ 0.79
SHKBP1-204ENST00000594862 TBX3O15119 743 aa20.01■□□□□ 0.79
SHKBP1-204ENST00000594862 EDIL3O43854 480 aa20.01■□□□□ 0.79
SHKBP1-204ENST00000594862 PSMD10O75832 226 aa20.01■□□□□ 0.79
SHKBP1-204ENST00000594862 FDPSP14324 419 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-204ENST00000594862 ETNPPLQ8TBG4 499 aa20.01■□□□□ 0.79
SHKBP1-204ENST00000594862 PRDM12Q9H4Q4 367 aa20.01■□□□□ 0.79
SHKBP1-204ENST00000594862 NRBP2Q9NSY0 501 aa20.01■□□□□ 0.79
SHKBP1-204ENST00000594862 SIP14410 1827 aa20.01■□□□□ 0.79
SHKBP1-204ENST00000594862 COL4A6Q14031 1691 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 MAGEB2O15479 319 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 MMP1P03956 469 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 GHRP10912 638 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 MYOGP15173 224 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 KLRC1P26715 233 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 HMGN5P82970 282 aaKnown RBP20■□□□□ 0.79
SHKBP1-204ENST00000594862 RABEP1Q15276 862 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 FBXO47Q5MNV8 452 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 ODR4Q5SWX8 454 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 PIK3AP1Q6ZUJ8 805 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 MIER3Q7Z3K6 550 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 TRAPPC12Q8WVT3 735 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 UIMC1Q96RL1 719 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 FTHL17Q9BXU8 183 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 INSL6Q9Y581 213 aa20■□□□□ 0.79
SHKBP1-204ENST00000594862 TTC28Q96AY4 2481 aa19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 CHMP2AO43633 222 aa19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 DKC1O60832 514 aaKnown RBP eCLIP19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 OATP04181 439 aa19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 LPIN1Q14693 890 aa19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 SAFBQ15424 915 aaKnown RBP eCLIP19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 TCTN1Q2MV58 587 aa19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 MYOCDQ8IZQ8 938 aa19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 CELF4Q9BZC1 486 aaKnown RBP19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 UNC45AQ9H3U1 944 aa19.99■□□□□ 0.79
SHKBP1-204ENST00000594862 WDR81Q562E7 1941 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms