RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PHF20Q9BVI0 1012 aa17.28■□□□□ 0.36
TRIM28-203ENST00000593582 OSBPL7Q9BZF2 842 aa17.28■□□□□ 0.36
TRIM28-203ENST00000593582 ORC3Q9UBD5 711 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-203ENST00000593582 PCDHA2Q9Y5H9 948 aa17.28■□□□□ 0.36
TRIM28-203ENST00000593582 GBF1Q92538 1859 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 KAT6AQ92794 2004 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 CYP3A7-CYP3A51PA0A087WV96 503 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 CCDC194A0A1B0GVG4 234 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 WDR64B1ANS9 1081 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 M0QZ92 97 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 GAS7O60861 476 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 CTDNEP1O95476 244 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 GHRP10912 638 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 IGFBP4P22692 258 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 CYP3A7P24462 503 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 MRPS6P82932 125 aaKnown RBP17.27■□□□□ 0.36
TRIM28-203ENST00000593582 TAP1Q03518 808 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 MGAT3Q09327 533 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 MKRN4PQ13434 485 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-203ENST00000593582 Q4G0T1 1027 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 LRCH2Q5VUJ6 765 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 FAM117BQ6P1L5 589 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 MTHFD1LQ6UB35 978 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 MYOCDQ8IZQ8 938 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 SLC5A5Q92911 643 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 MAFBQ9Y5Q3 323 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-203ENST00000593582 CDY2AQ9Y6F7 541 aa17.27■□□□□ 0.36
TRIM28-203ENST00000593582 SMIM35A0A1B0GVV1 85 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 RBAK-RBAKDNI3L0D1 243 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 TDP2O95551 362 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 KLRC1P26715 233 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 ADGRE1Q14246 886 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 LPIN1Q14693 890 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 INF2Q27J81 1249 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 ZNF484Q5JVG2 852 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 MOXD1Q6UVY6 613 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.26■□□□□ 0.357e-7■□□□□ 11
TRIM28-203ENST00000593582 NME8Q8N427 588 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 BBXQ8WY36 941 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-203ENST00000593582 TEKT3Q9BXF9 490 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 CERS4Q9HA82 394 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 DISC1Q9NRI5 854 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 GABBR1Q9UBS5 961 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 INSL6Q9Y581 213 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 COL1A2P08123 1366 aa17.26■□□□□ 0.35
TRIM28-203ENST00000593582 LCHNA4D1U4 455 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 CHMP2AO43633 222 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 DTNBO60941 627 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 LARGE1O95461 756 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 ATP4AP20648 1035 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 SFNP31947 248 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 JAK3P52333 1124 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 TMEM62Q0P6H9 643 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 FBXO47Q5MNV8 452 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 TSHZ1Q6ZSZ6 1077 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 ARNTL2Q8WYA1 636 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 FAM167AQ96KS9 214 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 GJB4Q9NTQ9 266 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 DDX25Q9UHL0 483 aaKnown RBP17.25■□□□□ 0.35
TRIM28-203ENST00000593582 VCANP13611 3396 aa17.25■□□□□ 0.35
TRIM28-203ENST00000593582 PSMD10O75832 226 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 ARHGEF15O94989 841 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 LETM2Q2VYF4 491 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 TRMT1LQ7Z2T5 733 aaKnown RBP17.24■□□□□ 0.35
TRIM28-203ENST00000593582 USP38Q8NB14 1042 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 GJA10Q969M2 543 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 TOP1MTQ969P6 601 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 MBOAT7Q96N66 472 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 BRMS1Q9HCU9 246 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 CEP131Q9UPN4 1083 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 TRPV2Q9Y5S1 764 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 SQORQ9Y6N5 450 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 TRANK1O15050 2925 aa17.24■□□□□ 0.35
TRIM28-203ENST00000593582 IGSF9BQ9UPX0 1349 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-203ENST00000593582 ZBTB42B2RXF5 422 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 UPP2O95045 317 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 FDPSP14324 419 aaKnown RBP17.23■□□□□ 0.35
TRIM28-203ENST00000593582 C8orf34Q49A92 452 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 PIK3AP1Q6ZUJ8 805 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 NEK8Q86SG6 692 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 NSUN7Q8NE18 718 aaKnown RBP17.23■□□□□ 0.35
TRIM28-203ENST00000593582 RDM1Q8NG50 284 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 OXER1Q8TDS5 423 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 PPM1EQ8WY54 764 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 YME1L1Q96TA2 773 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 CELF4Q9BZC1 486 aaKnown RBP17.23■□□□□ 0.35
TRIM28-203ENST00000593582 UNC45AQ9H3U1 944 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 NRBP2Q9NSY0 501 aa17.23■□□□□ 0.35
TRIM28-203ENST00000593582 LINC01553A4QN01 128 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 RFXAPO00287 272 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 GTPBP6O43824 516 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-203ENST00000593582 GCFC2P16383 781 aaKnown RBP17.22■□□□□ 0.35
TRIM28-203ENST00000593582 CD52P31358 61 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 KRT2P35908 639 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 HTRA4P83105 476 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-203ENST00000593582 PPP4R3AQ6IN85 833 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 MIER3Q7Z3K6 550 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 KIAA0319LQ8IZA0 1049 aa17.22■□□□□ 0.35
TRIM28-203ENST00000593582 METTL13Q8N6R0 699 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms