RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 NCOA5Q9HCD5 579 aaKnown RBP4.69□□□□□ -1.66
NUP88-209ENST00000574855 INCENPQ9NQS7 918 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 SMPD4Q9NXE4 827 aa4.69□□□□□ -1.66
NUP88-209ENST00000574855 C4BPAP04003 597 aaKnown RBP4.68□□□□□ -1.66
NUP88-209ENST00000574855 PTGS1P23219 599 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 POLD1P28340 1107 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 EPHB4P54760 987 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 SLFN13Q68D06 897 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 OVCH1Q7RTY7 1134 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 LIMS2Q7Z4I7 341 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 BRAPQ7Z569 592 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 RALYLQ86SE5 291 aaKnown RBP4.68□□□□□ -1.66
NUP88-209ENST00000574855 REXO1L1PQ8IX06 675 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 CISD2Q8N5K1 135 aaKnown RBP4.68□□□□□ -1.66
NUP88-209ENST00000574855 CHST13Q8NET6 341 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 WDR48Q8TAF3 677 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 GPR20Q99678 358 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 KATNBL1Q9H079 304 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 GALNT8Q9NY28 637 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 PPP4R1LQ9P1A2 415 aa4.68□□□□□ -1.66
NUP88-209ENST00000574855 SLC12A8A0AV02 714 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 ESYT3A0FGR9 886 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 B4E1Z4 1266 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 SCDO00767 359 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 CUTAO60888 179 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 CLSTN1O94985 981 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 RAPGEF3O95398 923 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 KCNA6P17658 529 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 NCLP19338 710 aaKnown RBP4.67□□□□□ -1.66
NUP88-209ENST00000574855 AOAHP28039 575 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 NFKB2Q00653 900 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 WDR72Q3MJ13 1102 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 FNDC3BQ53EP0 1204 aaKnown RBP4.67□□□□□ -1.66
NUP88-209ENST00000574855 TMEM177Q53S58 311 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 CPZQ66K79 652 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 CXXC5Q7LFL8 322 aaKnown RBP4.67□□□□□ -1.66
NUP88-209ENST00000574855 FGD2Q7Z6J4 655 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 IFNL2Q8IZJ0 200 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 TTC9BQ8N6N2 239 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 C2orf69Q8N8R5 385 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 IGSF22Q8N9C0 903 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 CARD11Q9BXL7 1154 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 TRIM39Q9HCM9 518 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 KCNH7Q9NS40 1196 aa4.67□□□□□ -1.66
NUP88-209ENST00000574855 HIP1RO75146 1068 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 CSF2RBP32927 897 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 ECE1P42892 770 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 USP10Q14694 798 aaKnown RBP4.66□□□□□ -1.66
NUP88-209ENST00000574855 SEC23AQ15436 765 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 ARHGAP44Q17R89 818 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 CCDC144BQ3MJ40 725 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 DDX53Q86TM3 631 aaKnown RBP4.66□□□□□ -1.66
NUP88-209ENST00000574855 CIR1Q86X95 450 aaPredicted RBP4.66□□□□□ -1.66
NUP88-209ENST00000574855 NOSTRINQ8IVI9 506 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 WNK4Q96J92 1243 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 SSBP3Q9BWW4 388 aaPredicted RBP4.66□□□□□ -1.66
NUP88-209ENST00000574855 BTBD2Q9BX70 525 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 KRTAP9-3Q9BYQ3 159 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 BTBD7Q9P203 1132 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 FBXO10Q9UK96 956 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 B3GALT1Q9Y5Z6 326 aa4.66□□□□□ -1.66
NUP88-209ENST00000574855 FOXP2O15409 715 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 MMEP08473 750 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 IGFALSP35858 605 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 IRX6P78412 446 aaPredicted RBP4.65□□□□□ -1.67
NUP88-209ENST00000574855 ADAM17P78536 824 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 TOP3AQ13472 1001 aaPredicted RBP4.65□□□□□ -1.67
NUP88-209ENST00000574855 SQSTM1Q13501 440 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 TMEM132BQ14DG7 1078 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 ZXDCQ2QGD7 858 aaPredicted RBP4.65□□□□□ -1.67
NUP88-209ENST00000574855 ZNF568Q3ZCX4 644 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 ABHD17CQ6PCB6 329 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 GPR155Q7Z3F1 870 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 HIPK4Q8NE63 616 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 SH3TC2Q8TF17 1288 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 ASB15Q8WXK1 588 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 DLG3Q92796 817 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 C8orf49Q96NF6 230 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 CLUHP3Q96NS8 147 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 GBP4Q96PP9 640 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 SEC61A2Q9H9S3 476 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 PRDM16Q9HAZ2 1276 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 UCKL1Q9NWZ5 548 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 SLC4A7Q9Y6M7 1214 aa4.65□□□□□ -1.67
NUP88-209ENST00000574855 ANKRD62A6NC57 917 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 GPR42O15529 346 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 CNOT4O95628 575 aaKnown RBP4.64□□□□□ -1.67
NUP88-209ENST00000574855 ASLP04424 464 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 SDHAP31040 664 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 MC4RP32245 332 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 IL13RA1P78552 427 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 STILQ15468 1287 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 ZMAT1Q5H9K5 638 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 ZCCHC8Q6NZY4 707 aaKnown RBP4.64□□□□□ -1.67
NUP88-209ENST00000574855 OTOP1Q7RTM1 612 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 SYNPOQ8N3V7 929 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 SCYL1Q96KG9 808 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 LMF1Q96S06 567 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 PTPN18Q99952 460 aa4.64□□□□□ -1.67
NUP88-209ENST00000574855 BOCQ9BWV1 1114 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms