RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, human

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-208	ENST00000567250	CAGE1	Q8TC20	777 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	LMBR1	Q8WVP7	490 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	CCDC43	Q96MW1	224 aa	Known RBP	13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	LXN	Q9BS40	222 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	RNPEP	Q9H4A4	650 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	ZSWIM4	Q9H7M6	989 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	TUFT1	Q9NNX1	390 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	NRBP2	Q9NSY0	501 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	TRMT13	Q9NUP7	481 aa	Known RBP	13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	TMEM39A	Q9NV64	488 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	TUBE1	Q9UJT0	475 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	PDE4DIP	Q5VU43	2346 aa		13.65	□□□□□ -0.22
SF3B3-208	ENST00000567250	KDM3A	Q9Y4C1	1321 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	INSRR	P14616	1297 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	MUT	P22033	750 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	PTK7	Q13308	1070 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	BFSP2	Q13515	415 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	PKP1	Q13835	747 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	PDIA5	Q14554	519 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	UGCG	Q16739	394 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	ZNF484	Q5JVG2	852 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	TAF2	Q6P1X5	1199 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	IGSF22	Q8N9C0	903 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	AK8	Q96MA6	479 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	EIF2AK1	Q9BQI3	630 aa	Known RBP	13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	LRWD1	Q9UFC0	647 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	CFAP45	Q9UL16	551 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	TBX21	Q9UL17	535 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	PPME1	Q9Y570	386 aa		13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.64	□□□□□ -0.23
SF3B3-208	ENST00000567250	VWA3A	A6NCI4	1184 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	PITPNM1	O00562	1244 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	KIAA0355	O15063	1070 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	CAND2	O75155	1236 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	YEATS4	O95619	227 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	RAG1	P15918	1043 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	NASP	P49321	788 aa	Predicted RBP	13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	IGBP1	P78318	339 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	CYP4A11	Q02928	519 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	STK38	Q15208	465 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	KRT79	Q5XKE5	535 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	FAM173B	Q6P4H8	233 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	OTUD6A	Q7L8S5	288 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	RSPH3	Q86UC2	560 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	SERINC5	Q86VE9	423 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	C4orf19	Q8IY42	314 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	EXOC8	Q8IYI6	725 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	SNX29	Q8TEQ0	813 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	DYDC2	Q96IM9	177 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	USP28	Q96RU2	1077 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	TRPV6	Q9H1D0	765 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	HIPK3	Q9H422	1215 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	SETD4	Q9NVD3	440 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	CLIC4	Q9Y696	253 aa		13.63	□□□□□ -0.23
SF3B3-208	ENST00000567250	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	ZNF862	O60290	1169 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	LYPLA2	O95372	231 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	RPA1	P27694	616 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	LONP1	P36776	959 aa	Known RBP	13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	KRT85	P78386	507 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	CEBPZ	Q03701	1054 aa	Known RBP	13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	RBL2	Q08999	1139 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	TPH2	Q8IWU9	490 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	RETREG2	Q8NC44	543 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	PPP1R13L	Q8WUF5	828 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	HSD17B14	Q9BPX1	270 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	JPH2	Q9BR39	696 aa	Predicted RBP	13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	NT5C3A	Q9H0P0	336 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	SI	P14410	1827 aa		13.62	□□□□□ -0.23
SF3B3-208	ENST00000567250	EVPL	Q92817	2033 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	TCHH	Q07283	1943 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	MAGEB2	O15479	319 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	TREH	O43280	583 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	SLC26A4	O43511	780 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	PARN	O95453	639 aa	Known RBP	13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	TIMP1	P01033	207 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	CYP2C9	P11712	490 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	ATP4A	P20648	1035 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	TMOD1	P28289	359 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	YWHAB	P31946	246 aa	Known RBP	13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	TXLNA	P40222	546 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	CCT6A	P40227	531 aa	Known RBP	13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	ADAM17	P78536	824 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	TBC1D8B	Q0IIM8	1120 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	CTTN	Q14247	550 aa	Known RBP	13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	SLC39A14	Q15043	492 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	PTPA	Q15257	358 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	MTERF2	Q49AM1	385 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	KCTD17	Q8N5Z5	321 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	KCNG4	Q8TDN1	519 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	CDK5RAP3	Q96JB5	506 aa		13.61	□□□□□ -0.23
SF3B3-208	ENST00000567250	NOC4L	Q9BVI4	516 aa	Known RBP	13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms