RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 BTG3Q14201 252 aaPredicted RBP12.96□□□□□ -0.33
CLN3-226ENST00000567160 TMTC3Q6ZXV5 915 aa12.96□□□□□ -0.33
CLN3-226ENST00000567160 ADSSL1Q8N142 457 aa12.96□□□□□ -0.33
CLN3-226ENST00000567160 SRBD1Q8N5C6 995 aaKnown RBP12.96□□□□□ -0.33
CLN3-226ENST00000567160 VAT1LQ9HCJ6 419 aa12.96□□□□□ -0.33
CLN3-226ENST00000567160 PLAGL2Q9UPG8 496 aa12.96□□□□□ -0.33
CLN3-226ENST00000567160 EIF3JO75822 258 aaKnown RBP12.95□□□□□ -0.34
CLN3-226ENST00000567160 LINC00271P0C7V0 271 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 GNAT1P11488 350 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 NRIP1P48552 1158 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 GNAQP50148 359 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 BECN1Q14457 450 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 SLC35G1Q2M3R5 365 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 USH1GQ495M9 461 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 KCNV1Q6PIU1 500 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 RMDN3Q96TC7 470 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 DMDP11532 3685 aa12.95□□□□□ -0.34
CLN3-226ENST00000567160 VPS13AQ96RL7 3174 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 CNTNAP5Q8WYK1 1306 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 hCG_1642624A0A1W2PR95 340 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 SRGAP2BP0DMP2 458 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 HIC1Q14526 733 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 ARHGEF16Q5VV41 709 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 CPLX2Q6PUV4 134 aaKnown RBP12.94□□□□□ -0.34
CLN3-226ENST00000567160 MCF2L2Q86YR7 1114 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 UBALD2Q8IYN6 164 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 ADGRF4Q8IZF3 695 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 PHKBQ93100 1093 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 SPATA33Q96N06 139 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 LZTS2Q9BRK4 669 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 SLC26A6Q9BXS9 759 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 FOXD4L1Q9NU39 408 aa12.94□□□□□ -0.34
CLN3-226ENST00000567160 BARX2Q9UMQ3 279 aaPredicted RBP12.94□□□□□ -0.34
CLN3-226ENST00000567160 ABCB11O95342 1321 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 TTC3P53804 2025 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 TREHO43280 583 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 CYTH3O43739 400 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 JAK2O60674 1132 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 CDKL5O76039 1030 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 CTDNEP1O95476 244 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 IFNAR1P17181 557 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 HOXC8P31273 242 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 MTMR3Q13615 1198 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 CAMK1Q14012 370 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 NTRK3Q16288 839 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 FRMD5Q7Z6J6 570 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 ADGRD2Q7Z7M1 963 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 HOMER1Q86YM7 354 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 SPRYD3Q8NCJ5 442 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 NSUN7Q8NE18 718 aaKnown RBP12.93□□□□□ -0.34
CLN3-226ENST00000567160 SYTL5Q8TDW5 730 aaPredicted RBP12.93□□□□□ -0.34
CLN3-226ENST00000567160 TAAR1Q96RJ0 339 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 SPZ1Q9BXG8 430 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 JMJD4Q9H9V9 463 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 RC3H2Q9HBD1 1191 aaKnown RBP12.93□□□□□ -0.34
CLN3-226ENST00000567160 KAT6AQ92794 2004 aa12.93□□□□□ -0.34
CLN3-226ENST00000567160 H3BRB1 525 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 GLP2RO95838 553 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 PDGFBP01127 241 aaPredicted RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 HSP90AA1P07900 732 aaKnown RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 SMIM10L2AP0DMW4 78 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 SMIM10L2BP0DMW5 78 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 EIF2AK2P19525 551 aaKnown RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 SSRP1Q08945 709 aaKnown RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 FUT2Q10981 343 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 CUL4AQ13619 759 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 HSDL1Q3SXM5 330 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 CELF3Q5SZQ8 465 aaKnown RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 MYSM1Q5VVJ2 828 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 DGLUCYQ7Z3D6 616 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 RBM23Q86U06 439 aaKnown RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 TRIM22Q8IYM9 498 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 SPPL3Q8TCT6 385 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 SUSD6Q92537 303 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 ZNF689Q96CS4 500 aaPredicted RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 PIGSQ96S52 555 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 CDCA3Q99618 268 aaPredicted RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 C16orf70Q9BSU1 422 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 TUT1Q9H6E5 874 aaKnown RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 RIOX1Q9H6W3 641 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 TLE6Q9H808 572 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 V9GY48 417 aaPredicted RBP12.92□□□□□ -0.34
CLN3-226ENST00000567160 KIAA1671Q9BY89 1806 aa12.92□□□□□ -0.34
CLN3-226ENST00000567160 RBAK-RBAKDNI3L0D1 243 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 DGKIO75912 1065 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 GGPS1O95749 300 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 ITGB1P05556 798 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 NR3C2P08235 984 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 DNAJB1P25685 340 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 SMARCA1P28370 1054 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 AKAP17AQ02040 695 aaKnown RBP12.91□□□□□ -0.34
CLN3-226ENST00000567160 CDC37Q16543 378 aaPredicted RBP12.91□□□□□ -0.34
CLN3-226ENST00000567160 FAM26DQ5JW98 314 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 CMTR2Q8IYT2 770 aaKnown RBP12.91□□□□□ -0.34
CLN3-226ENST00000567160 TMEM105Q8N8V8 129 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 KREMEN2Q8NCW0 462 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 POF1BQ8WVV4 589 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 RRP36Q96EU6 259 aaKnown RBP12.91□□□□□ -0.34
CLN3-226ENST00000567160 LLPHQ9BRT6 129 aaKnown RBP12.91□□□□□ -0.34
CLN3-226ENST00000567160 RNPEPQ9H4A4 650 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms