RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MAP7D2Q96T17 732 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 KCNJ15Q99712 375 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 IPPKQ9H8X2 491 aa6.18□□□□□ -1.42
VPS35-205ENST00000563984 GNL3LQ9NVN8 582 aaKnown RBP6.18□□□□□ -1.42
VPS35-205ENST00000563984 FBXO9Q9UK97 447 aaPredicted RBP6.18□□□□□ -1.42
VPS35-205ENST00000563984 CCDC163A0A0D9SF12 145 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 GOLGA6L3A6NEY3 463 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 WNT9AO14904 365 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 CYP7B1O75881 506 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 FAM200BP0CF97 657 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 PEX19P40855 299 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 C4orf46Q504U0 113 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 UBXN11Q5T124 520 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 ZNF761Q86XN6 746 aaPredicted RBP6.17□□□□□ -1.42
VPS35-205ENST00000563984 JMYQ8N9B5 988 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 ATL2Q8NHH9 583 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 ADAMTS17Q8TE56 1095 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 CLEC4DQ8WXI8 215 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 KISS1RQ969F8 398 aaPredicted RBP6.17□□□□□ -1.42
VPS35-205ENST00000563984 FAM210AQ96ND0 272 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 WRNIP1Q96S55 665 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 DNAJC7Q99615 494 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 MENTQ9BUN1 341 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 DSEQ9UL01 958 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 MRPS23Q9Y3D9 190 aaKnown RBP6.17□□□□□ -1.42
VPS35-205ENST00000563984 DUSP10Q9Y6W6 482 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 WASHC2CQ9Y4E1 1318 aa6.17□□□□□ -1.42
VPS35-205ENST00000563984 K7ESM1 405 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 NKRFO15226 690 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS35-205ENST00000563984 NOBOXO60393 691 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 COL6A2P12110 1019 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 BDNFP23560 247 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 CNR2P34972 360 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 EPHA5P54756 1037 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 GYS2P54840 703 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 GJA9P57773 515 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 IGBP1P78318 339 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 POU5F1Q01860 360 aaKnown RBP6.16□□□□□ -1.42
VPS35-205ENST00000563984 TUSC3Q13454 348 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 FAM26FQ5R3K3 315 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 CCAR1Q8IX12 1150 aaKnown RBP6.16□□□□□ -1.42
VPS35-205ENST00000563984 LSM14AQ8ND56 463 aaKnown RBP6.16□□□□□ -1.42
VPS35-205ENST00000563984 THAP3Q8WTV1 239 aaPredicted RBP6.16□□□□□ -1.42
VPS35-205ENST00000563984 CLIC6Q96NY7 704 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 ANAPC4Q9UJX5 808 aa6.16□□□□□ -1.42
VPS35-205ENST00000563984 GSTA4O15217 222 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 EFCAB14O75071 495 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 KIF20AO95235 890 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 PARNO95453 639 aaKnown RBP6.15□□□□□ -1.42
VPS35-205ENST00000563984 MAGEA10P43363 369 aaPredicted RBP6.15□□□□□ -1.42
VPS35-205ENST00000563984 GUCY1A3Q02108 690 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 LMOD3Q0VAK6 560 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 KIAA2012Q0VF49 1180 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 NEXNQ0ZGT2 675 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 CDC37Q16543 378 aaPredicted RBP6.15□□□□□ -1.42
VPS35-205ENST00000563984 ZNF827Q17R98 1081 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 PAN2Q504Q3 1202 aaKnown RBP6.15□□□□□ -1.42
VPS35-205ENST00000563984 GJC2Q5T442 439 aaPredicted RBP6.15□□□□□ -1.42
VPS35-205ENST00000563984 ICE2Q659A1 982 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 KCTD1Q719H9 257 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.15□□□□□ -1.42
VPS35-205ENST00000563984 ZSWIM2Q8NEG5 633 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 ITFG2Q969R8 447 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 OSBPL2Q9H1P3 480 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 PCDHA8Q9Y5H6 950 aa6.15□□□□□ -1.42
VPS35-205ENST00000563984 SYNRGQ9UMZ2 1314 aa6.15□□□□□ -1.43
VPS35-205ENST00000563984 hCG_2014768A0A024R1R8 64 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 VGLL3A8MV65 326 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 ARVCFO00192 962 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 FAHP16930 419 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 HMGA2P52926 109 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 PSMC1P62191 440 aaKnown RBP6.14□□□□□ -1.43
VPS35-205ENST00000563984 ADAM17P78536 824 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 GRIN1Q05586 938 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 NFE2L2Q16236 605 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 TBC1D10BQ4KMP7 808 aaPredicted RBP6.14□□□□□ -1.43
VPS35-205ENST00000563984 VASNQ6EMK4 673 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 C11orf96Q7Z7L8 435 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 NLGN4XQ8N0W4 816 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 FBXW5Q969U6 566 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 SCYL1Q96KG9 808 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 MYCBPQ99417 103 aaPredicted RBP6.14□□□□□ -1.43
VPS35-205ENST00000563984 PCGF6Q9BYE7 350 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 LNPKQ9C0E8 428 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 SUDS3Q9H7L9 328 aaPredicted RBP6.14□□□□□ -1.43
VPS35-205ENST00000563984 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS35-205ENST00000563984 SMC3Q9UQE7 1217 aa6.14□□□□□ -1.43
VPS35-205ENST00000563984 BICDL2A1A5D9 508 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 C9orf118A6NHY6 69 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 DDX3XO00571 662 aaKnown RBP eCLIP6.13□□□□□ -1.432e-9■■■■■ 46.6
VPS35-205ENST00000563984 LTFP02788 710 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 VDRP11473 427 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 NEFHP12036 1026 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 ZNF28P17035 718 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 IL13P35225 146 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 GPR19Q15760 415 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 RGL3Q3MIN7 710 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 C2orf27AQ580R0 203 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 PRAMEF18Q5VWM3 479 aa6.13□□□□□ -1.43
VPS35-205ENST00000563984 C16orf59Q7L2K0 433 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms