RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 TRAPPC12Q8WVT3 735 aa9.64□□□□□ -0.87
UBR1-204ENST00000563239 INTS4Q96HW7 963 aaKnown RBP9.64□□□□□ -0.87
UBR1-204ENST00000563239 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.64□□□□□ -0.873e-7■■■■■ 28.3
UBR1-204ENST00000563239 OSBPL7Q9BZF2 842 aa9.64□□□□□ -0.87
UBR1-204ENST00000563239 IL23AQ9NPF7 189 aa9.64□□□□□ -0.87
UBR1-204ENST00000563239 NOD1Q9Y239 953 aa9.64□□□□□ -0.87
UBR1-204ENST00000563239 CHD9Q3L8U1 2897 aa9.64□□□□□ -0.87
UBR1-204ENST00000563239 SOX1O00570 391 aaPredicted RBP9.63□□□□□ -0.87
UBR1-204ENST00000563239 HBP1O60381 514 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 NEMFO60524 1076 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 NBNO60934 754 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 GNAT1P11488 350 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 SELPP16109 830 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 MCM7P33993 719 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 TRAPPC10P48553 1259 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 IGBP1P78318 339 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 PPIGQ13427 754 aaKnown RBP eCLIP9.63□□□□□ -0.875e-6■□□□□ 11
UBR1-204ENST00000563239 BFSP2Q13515 415 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 ZNF174Q15697 407 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 CALCRLQ16602 461 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 TCTN1Q2MV58 587 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 LARP1BQ659C4 914 aaKnown RBP9.63□□□□□ -0.87
UBR1-204ENST00000563239 ZNF365Q70YC5 407 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 MIER3Q7Z3K6 550 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 RPAINQ86UA6 219 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 CEP89Q96ST8 783 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 WRAP73Q9P2S5 460 aaPredicted RBP9.63□□□□□ -0.87
UBR1-204ENST00000563239 TRPC6Q9Y210 931 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 KIF3AQ9Y496 699 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 SAMM50Q9Y512 469 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 TANC1Q9C0D5 1861 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 SCN5AQ14524 2016 aa9.63□□□□□ -0.87
UBR1-204ENST00000563239 WDR81Q562E7 1941 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 TMEM150BA6NC51 233 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 RRN3P2A6NIE6 340 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 CHRNA1P02708 482 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 CXCL10P02778 98 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 THPOP40225 353 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 TXKP42681 527 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 PRKCEQ02156 737 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 MGAT3Q09327 533 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 ORC2Q13416 577 aaPredicted RBP9.62□□□□□ -0.87
UBR1-204ENST00000563239 TARBP2Q15633 366 aaKnown RBP9.62□□□□□ -0.87
UBR1-204ENST00000563239 LRIT3Q3SXY7 679 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 FAM26DQ5JW98 314 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 TTC38Q5R3I4 469 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 MTHFD1LQ6UB35 978 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 LRRC8DQ7L1W4 858 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 SLFN12Q8IYM2 578 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 RETREG2Q8NC44 543 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 BANK1Q8NDB2 785 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 BBXQ8WY36 941 aaPredicted RBP9.62□□□□□ -0.87
UBR1-204ENST00000563239 TTC12Q9H892 705 aaPredicted RBP9.62□□□□□ -0.87
UBR1-204ENST00000563239 CXXC1Q9P0U4 656 aaPredicted RBP9.62□□□□□ -0.87
UBR1-204ENST00000563239 TUBE1Q9UJT0 475 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 PCDHB6Q9Y5E3 794 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 PCDHA2Q9Y5H9 948 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 COL1A2P08123 1366 aa9.62□□□□□ -0.87
UBR1-204ENST00000563239 RSPH10B2B2RC85 870 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 H3BQV1 296 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 CAND2O75155 1236 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 SLITRK3O94933 977 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 BAG4O95429 457 aaKnown RBP9.61□□□□□ -0.87
UBR1-204ENST00000563239 C22orf31O95567 290 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 OATP04181 439 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 RSPH10BP0C881 870 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 SYT1P21579 422 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 KLRC1P26715 233 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 RFC2P35250 354 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 GNL2Q13823 731 aaKnown RBP9.61□□□□□ -0.87
UBR1-204ENST00000563239 EPHA7Q15375 998 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 IL17AQ16552 155 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 ZNF484Q5JVG2 852 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 MCTP1Q6DN14 999 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 TAF2Q6P1X5 1199 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 ANO5Q75V66 913 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 TRMT1LQ7Z2T5 733 aaKnown RBP9.61□□□□□ -0.87
UBR1-204ENST00000563239 DEFB128Q7Z7B8 93 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 CKAP2LQ8IYA6 745 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 KIAA0319LQ8IZA0 1049 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 CCDC155Q8N6L0 562 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 LINC01465Q8N7H1 131 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 DNAJB3Q8WWF6 145 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 HERVK_113Q902F9 699 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 DYDC2Q96IM9 177 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 HSD17B14Q9BPX1 270 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 NIFKQ9BYG3 293 aaKnown RBP9.61□□□□□ -0.87
UBR1-204ENST00000563239 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.61□□□□□ -0.87
UBR1-204ENST00000563239 RGL1Q9NZL6 768 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 TCEAL9Q9UHQ7 104 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 PCDHA12Q9UN75 941 aa9.61□□□□□ -0.87
UBR1-204ENST00000563239 SMIM35A0A1B0GVV1 85 aa9.6□□□□□ -0.87
UBR1-204ENST00000563239 POTEMA6NI47 508 aa9.6□□□□□ -0.87
UBR1-204ENST00000563239 ZBTB39O15060 712 aa9.6□□□□□ -0.87
UBR1-204ENST00000563239 MARCH6O60337 910 aa9.6□□□□□ -0.87
UBR1-204ENST00000563239 FGBP02675 491 aa9.6□□□□□ -0.87
UBR1-204ENST00000563239 P4HBP07237 508 aaKnown RBP9.6□□□□□ -0.87
UBR1-204ENST00000563239 CTSHP09668 335 aa9.6□□□□□ -0.87
UBR1-204ENST00000563239 OR52Z1P0C646 297 aa9.6□□□□□ -0.87
UBR1-204ENST00000563239 QARSP47897 775 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms