RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TPRNQ4KMQ1 711 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 KRT79Q5XKE5 535 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 POTEBQ6S5H4 581 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 SLC39A5Q6ZMH5 540 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ANO5Q75V66 913 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 KCNK18Q7Z418 384 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 CABP7Q86V35 215 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 CKAP2LQ8IYA6 745 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ZNF579Q8NAF0 562 aaKnown RBP14.37□□□□□ -0.11
SHMT2-227ENST00000557269 SLC43A3Q8NBI5 491 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ERMNQ8TAM6 284 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ATP8B4Q8TF62 1192 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ATP6V0A1Q93050 837 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ZBTB10Q96DT7 871 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 AK8Q96MA6 479 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 SH2D3AQ9BRG2 576 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ZSWIM4Q9H7M6 989 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 TUFT1Q9NNX1 390 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 HDAC6Q9UBN7 1215 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ZNF215Q9UL58 517 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-227ENST00000557269 SCN10AQ9Y5Y9 1956 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 A0A087X0B3 334 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 DDX11L8A8MPP1 907 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 LYPLA2O95372 231 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 OATP04181 439 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 INSRRP14616 1297 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 CAPN2P17655 700 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 SLC26A2P50443 739 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 CDK7P50613 346 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 KARSQ15046 597 aaKnown RBP14.36□□□□□ -0.11
SHMT2-227ENST00000557269 ZRSR1Q15695 479 aaKnown RBP14.36□□□□□ -0.11
SHMT2-227ENST00000557269 HYIQ5T013 277 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 PLA2G4FQ68DD2 849 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 CLEC17AQ6ZS10 378 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 NECAB2Q7Z6G3 386 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 C4orf19Q8IY42 314 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 NEK9Q8TD19 979 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 PIGOQ8TEQ8 1089 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 TRAPPC12Q8WVT3 735 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 KATNAL1Q9BW62 490 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 CCSER1Q9C0I3 900 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 SETD4Q9NVD3 440 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 KIAA1024Q9UPX6 916 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 TRPC6Q9Y210 931 aa14.36□□□□□ -0.11
SHMT2-227ENST00000557269 A0A0U1RQG5 324 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-227ENST00000557269 ARVCFO00192 962 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 YWHABP31946 246 aaKnown RBP14.35□□□□□ -0.11
SHMT2-227ENST00000557269 UBA7P41226 1012 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 NPEPPSP55786 919 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 LRRC26Q2I0M4 334 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 TMEM119Q4V9L6 283 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 XKR3Q5GH77 459 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 MARCH8Q5T0T0 291 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 RESP18Q5W5W9 173 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 HAUS3Q68CZ6 603 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 GDF6Q6KF10 455 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-227ENST00000557269 C7orf31Q8N865 590 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 BBXQ8WY36 941 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-227ENST00000557269 CTAGE1Q96RT6 745 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 CEP89Q96ST8 783 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 NIFKQ9BYG3 293 aaKnown RBP14.35□□□□□ -0.11
SHMT2-227ENST00000557269 PANK2Q9BZ23 570 aa14.35□□□□□ -0.11
SHMT2-227ENST00000557269 DDX19AQ9NUU7 478 aaKnown RBP14.35□□□□□ -0.11
SHMT2-227ENST00000557269 E9PMD0 336 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 RBAK-RBAKDNI3L0D1 243 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 HBP1O60381 514 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 GADD45BO75293 160 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-227ENST00000557269 HOXC8P31273 242 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 IGBP1P78318 339 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 ADAM17P78536 824 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 PPFIA1Q13136 1202 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 SNX17Q15036 470 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 TARBP2Q15633 366 aaKnown RBP14.34□□□□□ -0.11
SHMT2-227ENST00000557269 GRIK4Q16099 956 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 FAM47CQ5HY64 1035 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 ADALQ6DHV7 355 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 NFRKBQ6P4R8 1299 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 SESTD1Q86VW0 696 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 LMBR1Q8WVP7 490 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 TRPV6Q9H1D0 765 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 GOLPH3LQ9H4A5 285 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 NRBP2Q9NSY0 501 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 TRMT13Q9NUP7 481 aaKnown RBP14.34□□□□□ -0.11
SHMT2-227ENST00000557269 SEPT9Q9UHD8 586 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-227ENST00000557269 GTF2IRD1Q9UHL9 959 aa14.34□□□□□ -0.11
SHMT2-227ENST00000557269 MYH9P35579 1960 aaKnown RBP14.33□□□□□ -0.12
SHMT2-227ENST00000557269 B4GALT4O60513 344 aa14.33□□□□□ -0.12
SHMT2-227ENST00000557269 PLCG1P19174 1290 aa14.33□□□□□ -0.12
SHMT2-227ENST00000557269 CMA1P23946 247 aa14.33□□□□□ -0.12
SHMT2-227ENST00000557269 TRIM60Q495X7 471 aa14.33□□□□□ -0.12
SHMT2-227ENST00000557269 MTERF2Q49AM1 385 aa14.33□□□□□ -0.12
SHMT2-227ENST00000557269 TMEM87AQ8NBN3 555 aa14.33□□□□□ -0.12
SHMT2-227ENST00000557269 FAM167AQ96KS9 214 aa14.33□□□□□ -0.12
SHMT2-227ENST00000557269 NACC1Q96RE7 527 aa14.33□□□□□ -0.12
SHMT2-227ENST00000557269 STK24Q9Y6E0 443 aa14.33□□□□□ -0.12
SHMT2-227ENST00000557269 A0A1B0GVL5 298 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 C17orf102A2RUQ5 167 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 TREHO43280 583 aa14.32□□□□□ -0.12
SHMT2-227ENST00000557269 DKC1O60832 514 aaKnown RBP eCLIP14.32□□□□□ -0.12
SHMT2-227ENST00000557269 MUTP22033 750 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms