RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 IGBP1P78318 339 aa15.73■□□□□ 0.11
VIPAS39-208ENST00000556412 USP49Q70CQ1 688 aa15.73■□□□□ 0.11
VIPAS39-208ENST00000556412 TUFT1Q9NNX1 390 aa15.73■□□□□ 0.11
VIPAS39-208ENST00000556412 BRCA2P51587 3418 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 SPATA31C1P0DKV0 1188 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 SMIM10L2AP0DMW4 78 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 SMIM10L2BP0DMW5 78 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 ATP4AP20648 1035 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 RPA1P27694 616 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 ATP8B4Q8TF62 1192 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 CCDC43Q96MW1 224 aaKnown RBP15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 SH2D3AQ9BRG2 576 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 MMTAG2Q9BU76 263 aaKnown RBP15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 POLR3CQ9BUI4 534 aaPredicted RBP15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 NRBP2Q9NSY0 501 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 DDX19AQ9NUU7 478 aaKnown RBP15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 KIAA1024Q9UPX6 916 aa15.72■□□□□ 0.11
VIPAS39-208ENST00000556412 GOLGA6L4A6NEF3 574 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 HAS3O00219 553 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 COL6A1P12109 1028 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 YWHABP31946 246 aaKnown RBP15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 PPFIA1Q13136 1202 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 KARSQ15046 597 aaKnown RBP15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 ECM1Q16610 540 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 CSPP1Q1MSJ5 1256 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 XKR3Q5GH77 459 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 AXDND1Q5T1B0 1012 aaPredicted RBP15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 PLA2G4FQ68DD2 849 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 PIGOQ8TEQ8 1089 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 CALML4Q96GE6 196 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 FAM167AQ96KS9 214 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 PANK2Q9BZ23 570 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 SETD4Q9NVD3 440 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 HDAC6Q9UBN7 1215 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 GRIN2DO15399 1336 aa15.71■□□□□ 0.11
VIPAS39-208ENST00000556412 ZBTB39O15060 712 aa15.71■□□□□ 0.1
VIPAS39-208ENST00000556412 INSRRP14616 1297 aa15.71■□□□□ 0.1
VIPAS39-208ENST00000556412 SHC4Q6S5L8 630 aa15.71■□□□□ 0.1
VIPAS39-208ENST00000556412 C4orf19Q8IY42 314 aa15.71■□□□□ 0.1
VIPAS39-208ENST00000556412 ZNF579Q8NAF0 562 aaKnown RBP15.71■□□□□ 0.1
VIPAS39-208ENST00000556412 TRAPPC12Q8WVT3 735 aa15.71■□□□□ 0.1
VIPAS39-208ENST00000556412 BBXQ8WY36 941 aaPredicted RBP15.71■□□□□ 0.1
VIPAS39-208ENST00000556412 KDM3AQ9Y4C1 1321 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 C17orf102A2RUQ5 167 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 ARVCFO00192 962 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 HBP1O60381 514 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 PQBP1O60828 265 aaKnown RBP15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 CAPN15O75808 1086 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 GRIK4Q16099 956 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 MTERF2Q49AM1 385 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 SLC39A5Q6ZMH5 540 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 PDILTQ8N807 584 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 GBP4Q96PP9 640 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 FAM13BQ9NYF5 915 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 CCDC39Q9UFE4 941 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 NOD1Q9Y239 953 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 ATP11BQ9Y2G3 1177 aa15.7■□□□□ 0.1
VIPAS39-208ENST00000556412 NPEPPSP55786 919 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 GRB10Q13322 594 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 XKR9Q5GH70 373 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 ADALQ6DHV7 355 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 NFRKBQ6P4R8 1299 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 ANO5Q75V66 913 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 OTUD6AQ7L8S5 288 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 ZBTB10Q96DT7 871 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 CEP170P1Q96L14 293 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 PNMA5Q96PV4 448 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 NACC1Q96RE7 527 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 NT5C3AQ9H0P0 336 aa15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 BMP2KQ9NSY1 1161 aaPredicted RBP15.69■□□□□ 0.1
VIPAS39-208ENST00000556412 E9PMD0 336 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 SSBP05455 408 aaKnown RBP eCLIP15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 PLCG1P19174 1290 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 ZNF200P98182 395 aaPredicted RBP15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 TRIM60Q495X7 471 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 GDF6Q6KF10 455 aaPredicted RBP15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 LMBR1Q8WVP7 490 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 CCSER1Q9C0I3 900 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 TRMT13Q9NUP7 481 aaKnown RBP15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 GTF2IRD1Q9UHL9 959 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 DNM3Q9UQ16 869 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 NRCAMQ92823 1304 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 STBD1O95210 358 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 LYPLA2O95372 231 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 GNAT1P11488 350 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 LRRC26Q2I0M4 334 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 RRAGBQ5VZM2 374 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 RESP18Q5W5W9 173 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 UBE2Q1Q7Z7E8 422 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 FSIP1Q8NA03 581 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 TRPV6Q9H1D0 765 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 DOCK5Q9H7D0 1870 aa15.68■□□□□ 0.1
VIPAS39-208ENST00000556412 A0A1B0GVL5 298 aa15.67■□□□□ 0.1
VIPAS39-208ENST00000556412 ARHGEF35A5YM69 484 aa15.67■□□□□ 0.1
VIPAS39-208ENST00000556412 PRPF40AO75400 957 aaKnown RBP15.67■□□□□ 0.1
VIPAS39-208ENST00000556412 MUTP22033 750 aa15.67■□□□□ 0.1
VIPAS39-208ENST00000556412 RTP1P59025 263 aa15.67■□□□□ 0.1
VIPAS39-208ENST00000556412 HIC1Q14526 733 aa15.67■□□□□ 0.1
VIPAS39-208ENST00000556412 DHX8Q14562 1220 aaKnown RBP15.67■□□□□ 0.1
VIPAS39-208ENST00000556412 PTGISQ16647 500 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms