RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 CNTD2Q9H8S5 307 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 TOPORSQ9NS56 1045 aaPredicted RBP7.79□□□□□ -1.16
LINC00643-204ENST00000555934 C14orf119Q9NWQ9 140 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 ARHGAP28Q9P2N2 729 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 C8BP07358 591 aa7.78□□□□□ -1.16
LINC00643-204ENST00000555934 CDR1P51861 262 aa7.78□□□□□ -1.16
LINC00643-204ENST00000555934 NKX3-2P78367 333 aa7.78□□□□□ -1.16
LINC00643-204ENST00000555934 DBPQ10586 325 aaPredicted RBP7.78□□□□□ -1.16
LINC00643-204ENST00000555934 LDHDQ86WU2 507 aa7.78□□□□□ -1.16
LINC00643-204ENST00000555934 SCYL1Q96KG9 808 aa7.78□□□□□ -1.16
LINC00643-204ENST00000555934 C16orf92Q96LL3 132 aa7.78□□□□□ -1.16
LINC00643-204ENST00000555934 SEMA4AQ9H3S1 761 aa7.78□□□□□ -1.16
LINC00643-204ENST00000555934 MBD1Q9UIS9 605 aaPredicted RBP7.78□□□□□ -1.16
LINC00643-204ENST00000555934 MSRAQ9UJ68 235 aa7.78□□□□□ -1.16
LINC00643-204ENST00000555934 WASF3Q9UPY6 502 aa7.78□□□□□ -1.16
LINC00643-204ENST00000555934 KDM1AO60341 852 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 APOL3O95236 402 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 MT-CO1P00395 513 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 NCAM1P13591 858 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 ATF2P15336 505 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 FBLN1P23142 703 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 CD40P25942 277 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 THBS2P35442 1172 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 IARSP41252 1262 aaKnown RBP7.77□□□□□ -1.17
LINC00643-204ENST00000555934 EPHB3P54753 998 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 SYDE2Q5VT97 1194 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 LIPIQ6XZB0 460 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 ZC3H18Q86VM9 953 aaKnown RBP7.77□□□□□ -1.17
LINC00643-204ENST00000555934 RASSF3Q86WH2 238 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 CILP2Q8IUL8 1156 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 RAVER1Q8IY67 606 aaKnown RBP7.77□□□□□ -1.17
LINC00643-204ENST00000555934 ZNF610Q8N9Z0 462 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 SMARCC2Q8TAQ2 1214 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 JDP2Q8WYK2 163 aa7.77□□□□□ -1.17
LINC00643-204ENST00000555934 GOLGA8AA7E2F4 631 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 GOLGA8BA8MQT2 603 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 GABRDO14764 452 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 ALDH1L1O75891 902 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 AOAHP28039 575 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 FNTBP49356 437 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 PHC1P78364 1004 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 PFKPQ01813 784 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 CACNB2Q08289 660 aaPredicted RBP7.76□□□□□ -1.17
LINC00643-204ENST00000555934 PROSER1Q86XN7 944 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 TGFBRAP1Q8WUH2 860 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 ZNF496Q96IT1 587 aaPredicted RBP7.76□□□□□ -1.17
LINC00643-204ENST00000555934 ZSWIM3Q96MP5 696 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 TUBGCP5Q96RT8 1024 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 ZDHHC5Q9C0B5 715 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 PDGFDQ9GZP0 370 aaPredicted RBP7.76□□□□□ -1.17
LINC00643-204ENST00000555934 POFUT1Q9H488 388 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 BTBD7Q9P203 1132 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 FAN1Q9Y2M0 1017 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 RNF114Q9Y508 228 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 PCDHA5Q9Y5H7 936 aa7.76□□□□□ -1.17
LINC00643-204ENST00000555934 UBA6A0AVT1 1052 aaPredicted RBP7.75□□□□□ -1.17
LINC00643-204ENST00000555934 HRKO00198 91 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 CLEC2LP0C7M8 214 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 MYBL2P10244 700 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 PTGS1P23219 599 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 GLRBP48167 497 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 ERVK-21P61565 698 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 HERVK_113P62684 666 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 LRRC32Q14392 662 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 PDCD1Q15116 288 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 EPHA7Q15375 998 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 VASNQ6EMK4 673 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 LRSAM1Q6UWE0 723 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 RTN4RL1Q86UN2 441 aaPredicted RBP7.75□□□□□ -1.17
LINC00643-204ENST00000555934 ZZZ3Q8IYH5 903 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 C7orf31Q8N865 590 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 FOXRED1Q96CU9 486 aaPredicted RBP7.75□□□□□ -1.17
LINC00643-204ENST00000555934 ANO3Q9BYT9 981 aa7.75□□□□□ -1.17
LINC00643-204ENST00000555934 THRAP3Q9Y2W1 955 aaKnown RBP7.75□□□□□ -1.17
LINC00643-204ENST00000555934 GOLGA6L22H0YM25 854 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 PEX10O60683 326 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 ENO2P09104 434 aaPredicted RBP7.74□□□□□ -1.17
LINC00643-204ENST00000555934 CYP2C8P10632 490 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 LIMS1P48059 325 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 SLC6A3Q01959 620 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 TTF1Q15361 905 aaPredicted RBP7.74□□□□□ -1.17
LINC00643-204ENST00000555934 TARBP2Q15633 366 aaKnown RBP7.74□□□□□ -1.17
LINC00643-204ENST00000555934 PRAMEF9Q5VWM5 478 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 FRMD7Q6ZUT3 714 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 MZB1Q8WU39 189 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 ASB1Q9Y576 335 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 TNKSO95271 1327 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 WASHC2AQ641Q2 1341 aa7.74□□□□□ -1.17
LINC00643-204ENST00000555934 TEX51A0A1B0GUA7 166 aa7.73□□□□□ -1.17
LINC00643-204ENST00000555934 ZNF839A8K0R7 811 aa7.73□□□□□ -1.17
LINC00643-204ENST00000555934 NFIBO00712 420 aa7.73□□□□□ -1.17
LINC00643-204ENST00000555934 PFKLP17858 780 aa7.73□□□□□ -1.17
LINC00643-204ENST00000555934 KLF1Q13351 362 aaPredicted RBP7.73□□□□□ -1.17
LINC00643-204ENST00000555934 FZD5Q13467 585 aa7.73□□□□□ -1.17
LINC00643-204ENST00000555934 PTPN21Q16825 1174 aa7.73□□□□□ -1.17
LINC00643-204ENST00000555934 SKIDA1Q1XH10 827 aa7.73□□□□□ -1.17
LINC00643-204ENST00000555934 GPR158Q5T848 1215 aa7.73□□□□□ -1.17
LINC00643-204ENST00000555934 IGDCC3Q8IVU1 814 aa7.73□□□□□ -1.17
LINC00643-204ENST00000555934 CBARPQ8N350 705 aaPredicted RBP7.73□□□□□ -1.17
LINC00643-204ENST00000555934 CPA5Q8WXQ8 436 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms