RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 PER2O15055 1255 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 PPFIA3O75145 1194 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 STAG3L1P0CL83 205 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 VCPP55072 806 aaKnown RBP10.42□□□□□ -0.74
SYNE2-209ENST00000553308 TMEM266Q2M3C6 531 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 IER5Q5VY09 327 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 MB21D2Q8IYB1 491 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-209ENST00000553308 CMTR1Q8N1G2 835 aaKnown RBP10.42□□□□□ -0.74
SYNE2-209ENST00000553308 FBXL6Q8N531 539 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 SRBD1Q8N5C6 995 aaKnown RBP10.42□□□□□ -0.74
SYNE2-209ENST00000553308 CTCFLQ8NI51 663 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-209ENST00000553308 RPGRIP1Q96KN7 1286 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 PHF7Q9BWX1 381 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-209ENST00000553308 LY9Q9HBG7 655 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 JPH1Q9HDC5 661 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-209ENST00000553308 FAM86C1Q9NVL1 165 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 HCSTQ9UBK5 93 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 TRPC6Q9Y210 931 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 SQORQ9Y6N5 450 aa10.42□□□□□ -0.74
SYNE2-209ENST00000553308 hCG_1642624A0A1W2PR95 340 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 MGEA5O60502 916 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 DDAH1O94760 285 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 RPLP2P05387 115 aaKnown RBP10.41□□□□□ -0.74
SYNE2-209ENST00000553308 KIF5BP33176 963 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 SARSP49591 514 aaKnown RBP10.41□□□□□ -0.74
SYNE2-209ENST00000553308 SIGLEC14Q08ET2 396 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 AAMPQ13685 434 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 PLCB4Q15147 1175 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 MICAL1Q8TDZ2 1067 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 SUSD6Q92537 303 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 MAP3K14Q99558 947 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 CELF4Q9BZC1 486 aaKnown RBP10.41□□□□□ -0.74
SYNE2-209ENST00000553308 TLE6Q9H808 572 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 PSTPIP2Q9H939 334 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 JADE2Q9NQC1 790 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 SLC9A2Q9UBY0 812 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 LRFN2Q9ULH4 789 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 PCDHA2Q9Y5H9 948 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 WDFY4Q6ZS81 3184 aa10.41□□□□□ -0.74
SYNE2-209ENST00000553308 FNDC1Q4ZHG4 1894 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-209ENST00000553308 KDM3AQ9Y4C1 1321 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 SPDYE3A6NKU9 549 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 TBKBP1A7MCY6 615 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 ATF7P17544 494 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-209ENST00000553308 RXRAP19793 462 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 CHMLP26374 656 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 PDE4AP27815 886 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 SMARCA1P28370 1054 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 KRT76Q01546 638 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 NFX1Q12986 1120 aaKnown RBP10.4□□□□□ -0.74
SYNE2-209ENST00000553308 COL9A3Q14050 684 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-209ENST00000553308 PKN1Q16512 942 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 DUSP6Q16828 381 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 SPOUT1Q5T280 376 aaKnown RBP10.4□□□□□ -0.74
SYNE2-209ENST00000553308 TTC22Q5TAA0 569 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 RAB11FIP4Q86YS3 637 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 CYP2W1Q8TAV3 490 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 ATP8B4Q8TF62 1192 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 ASIC4Q96FT7 647 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 PRRX2Q99811 253 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 AZI2Q9H6S1 392 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 ERVK-5Q9HDB9 667 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 TLR9Q9NR96 1032 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 KCNH7Q9NS40 1196 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 PCDHA6Q9UN73 950 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 GINS2Q9Y248 185 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 PCDHA8Q9Y5H6 950 aa10.4□□□□□ -0.74
SYNE2-209ENST00000553308 SMIM35A0A1B0GVV1 85 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 ST18O60284 1047 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 GFRA3O60609 400 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 FGF18O76093 207 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 SP100P23497 879 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-209ENST00000553308 ERVFC1P60507 584 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 ACTR2P61160 394 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 UBE3AQ05086 875 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 APOBRQ0VD83 1088 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 PTPN21Q16825 1174 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 FAM102BQ5T8I3 360 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 MTHFD1LQ6UB35 978 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 NFXL1Q6ZNB6 911 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 THNSL1Q8IYQ7 743 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 COLGALT1Q8NBJ5 622 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 EXOC6Q8TAG9 804 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 TMEM40Q8WWA1 233 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 RUFY2Q8WXA3 655 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 PGBD1Q96JS3 809 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 NEK1Q96PY6 1258 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 ADAM2Q99965 735 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 LZTS2Q9BRK4 669 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 APOL5Q9BWW9 433 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 CDHR5Q9HBB8 845 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 NOC2LQ9Y3T9 749 aaKnown RBP10.39□□□□□ -0.75
SYNE2-209ENST00000553308 PCDHB7Q9Y5E2 793 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 PCDHB12Q9Y5F1 795 aa10.39□□□□□ -0.75
SYNE2-209ENST00000553308 NFASCO94856 1347 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 DENND3A2RUS2 1198 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 C9IYK1 514 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 SH2B2O14492 632 aaPredicted RBP10.38□□□□□ -0.75
SYNE2-209ENST00000553308 FSCN2O14926 492 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 MAFGO15525 162 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms