RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TEX2Q8IWB9 1127 aa16.02■□□□□ 0.16
CLIP1-216ENST00000541410 C12orf42Q96LP6 360 aa16.02■□□□□ 0.16
CLIP1-216ENST00000541410 ELP3Q9H9T3 547 aa16.02■□□□□ 0.16
CLIP1-216ENST00000541410 REXO2Q9Y3B8 237 aaKnown RBP16.02■□□□□ 0.16
CLIP1-216ENST00000541410 EPN1Q9Y6I3 576 aaPredicted RBP16.02■□□□□ 0.16
CLIP1-216ENST00000541410 NDUFA10O95299 355 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 CCNE2O96020 404 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 NR3C2P08235 984 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 GHRHRQ02643 423 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 OTUD5Q96G74 571 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 PARVGQ9HBI0 331 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 NLRC4Q9NPP4 1024 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 A1CFQ9NQ94 594 aaKnown RBP16.02■□□□□ 0.15
CLIP1-216ENST00000541410 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.02■□□□□ 0.15
CLIP1-216ENST00000541410 PPP2R3BQ9Y5P8 575 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 ASTN1O14525 1302 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 WDR90Q96KV7 1748 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 PTPRFP10586 1907 aa16.02■□□□□ 0.15
CLIP1-216ENST00000541410 HIP1RO75146 1068 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 KIF20AO95235 890 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 MAP3K9P80192 1104 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 ODR4Q5SWX8 454 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 PADI6Q6TGC4 694 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 NUP58Q9BVL2 599 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 ADAMTS5Q9UNA0 930 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 OTOFQ9HC10 1997 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 FRMPD4Q14CM0 1322 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 PHLPP2Q6ZVD8 1323 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 CETN3O15182 167 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 USO1O60763 962 aaKnown RBP16.01■□□□□ 0.15
CLIP1-216ENST00000541410 CASQ1P31415 396 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 ZBED6P86452 979 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 FSTL1Q12841 308 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 TTLL12Q14166 644 aaPredicted RBP16.01■□□□□ 0.15
CLIP1-216ENST00000541410 ARHGAP29Q52LW3 1261 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 PLA2G4FQ68DD2 849 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 GADL1Q6ZQY3 521 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 RRAGAQ7L523 313 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 CEP63Q96MT8 703 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 TEX13BQ9BXU2 312 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 TCEAL9Q9UHQ7 104 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 PCDHB13Q9Y5F0 798 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 WDR81Q562E7 1941 aa16.01■□□□□ 0.15
CLIP1-216ENST00000541410 IRF6O14896 467 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 AKAP3O75969 853 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 P4HBP07237 508 aaKnown RBP16■□□□□ 0.15
CLIP1-216ENST00000541410 CYP27A1Q02318 531 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 NCBP1Q09161 790 aaKnown RBP16■□□□□ 0.15
CLIP1-216ENST00000541410 DCAF17Q5H9S7 520 aaPredicted RBP16■□□□□ 0.15
CLIP1-216ENST00000541410 ZNF569Q5MCW4 686 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 NOL9Q5SY16 702 aaKnown RBP16■□□□□ 0.15
CLIP1-216ENST00000541410 TRIM59Q8IWR1 403 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 FAM178BQ8IXR5 827 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 DAW1Q8N136 415 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 R3HDMLQ9H3Y0 253 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 ZSWIM4Q9H7M6 989 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 CYP39A1Q9NYL5 469 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 CSADQ9Y600 493 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 GOLGA6L9A6NEM1 432 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 LRRC53A6NM62 1247 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 TGFB1I1O43294 461 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 RGS20O76081 388 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 NR3C1P04150 777 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 NPEPPSP55786 919 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 CNTN2Q02246 1040 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 FIZ1Q96SL8 496 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 NHEJ1Q9H9Q4 299 aaPredicted RBP16■□□□□ 0.15
CLIP1-216ENST00000541410 GPRC5CQ9NQ84 441 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 TRAF3IP3Q9Y228 551 aa16■□□□□ 0.15
CLIP1-216ENST00000541410 ZMYM2Q9UBW7 1377 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 TULP1O00294 542 aaPredicted RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 PPP1R12BO60237 982 aaPredicted RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 QARSP47897 775 aaKnown RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 KCNH2Q12809 1159 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 EDRF1Q3B7T1 1238 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 TCERG1LQ5VWI1 586 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 NIPA1Q7RTP0 329 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 VSIG10LQ86VR7 867 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 RETREG2Q8NC44 543 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 LSM14BQ9BX40 385 aaKnown RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 ACAD9Q9H845 621 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 OLFML3Q9NRN5 406 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 ZNHIT6Q9NWK9 470 aaKnown RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 HOXC10Q9NYD6 342 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 MAP3K20Q9NYL2 800 aaKnown RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 GUCA1BQ9UMX6 200 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 SLU7O95391 586 aaKnown RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 FDX1P10109 184 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 GAP43P17677 238 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 CCND2P30279 289 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 YWHABP31946 246 aaKnown RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 ARHGAP25P42331 645 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 HERVK_113P62684 666 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 MAPK7Q13164 816 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 ENOX2Q16206 610 aaKnown RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 CACNA2D4Q7Z3S7 1137 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 ZNF397Q8NF99 534 aaPredicted RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 NEK11Q8NG66 645 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 L2HGDHQ9H9P8 463 aa15.99■□□□□ 0.15
CLIP1-216ENST00000541410 TBC1D22BQ9NU19 505 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms