RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 RGPD4Q7Z3J3 1758 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 KCPQ6ZWJ8 1503 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 LEFTY1O75610 366 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 SURF6O75683 361 aaKnown RBP7.48□□□□□ -1.21
USP28-202ENST00000535607 HMGB1P09429 215 aaKnown RBP7.48□□□□□ -1.21
USP28-202ENST00000535607 MCM3P25205 808 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 CCZ1BP86790 482 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 CCZ1P86791 482 aaPredicted RBP7.48□□□□□ -1.21
USP28-202ENST00000535607 OS9Q13438 667 aaPredicted RBP7.48□□□□□ -1.21
USP28-202ENST00000535607 DCTN1Q14203 1278 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 BRD3Q15059 726 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 CLEC16AQ2KHT3 1053 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 HSP90B2PQ58FF3 399 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 NOL9Q5SY16 702 aaKnown RBP7.48□□□□□ -1.21
USP28-202ENST00000535607 TDRD10Q5VZ19 366 aaKnown RBP7.48□□□□□ -1.21
USP28-202ENST00000535607 ZNF765Q7L2R6 523 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 TEX2Q8IWB9 1127 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 CCAR1Q8IX12 1150 aaKnown RBP7.48□□□□□ -1.21
USP28-202ENST00000535607 TMEM192Q8IY95 271 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 FBXO18Q8NFZ0 1043 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 DNAJB8Q8NHS0 232 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 PPP1R14AQ96A00 147 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 ZNF512BQ96KM6 892 aaPredicted RBP7.48□□□□□ -1.21
USP28-202ENST00000535607 PPP1R13BQ96KQ4 1090 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 DEPDC7Q96QD5 511 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 SPOCK3Q9BQ16 436 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 LRRC4CQ9HCJ2 640 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 ORC3Q9UBD5 711 aaPredicted RBP7.48□□□□□ -1.21
USP28-202ENST00000535607 RSPH14Q9UHP6 348 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 PCDHB10Q9UN67 800 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 LEMD3Q9Y2U8 911 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 PCDHB12Q9Y5F1 795 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 FHOD1Q9Y613 1164 aa7.48□□□□□ -1.21
USP28-202ENST00000535607 HEG1Q9ULI3 1381 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 EP400Q96L91 3159 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 FAM170BA6NMN3 283 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 BTBD11A6QL63 1104 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 ZRANB2O95218 330 aaKnown RBP eCLIP7.47□□□□□ -1.211e-6■■■■■ 42
USP28-202ENST00000535607 GJB6O95452 261 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 IFIT2P09913 472 aaKnown RBP7.47□□□□□ -1.21
USP28-202ENST00000535607 SETQ01105 290 aaPredicted RBP7.47□□□□□ -1.21
USP28-202ENST00000535607 SMC1AQ14683 1233 aaKnown RBP7.47□□□□□ -1.21
USP28-202ENST00000535607 IQCB1Q15051 598 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 ERCC6LQ2NKX8 1250 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 MTERF2Q49AM1 385 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 TTC31Q49AM3 519 aaPredicted RBP7.47□□□□□ -1.21
USP28-202ENST00000535607 CCDC93Q567U6 631 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 NAA16Q6N069 864 aaPredicted RBP7.47□□□□□ -1.21
USP28-202ENST00000535607 CWC27Q6UX04 472 aaKnown RBP7.47□□□□□ -1.21
USP28-202ENST00000535607 SYT10Q6XYQ8 523 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 LRP10Q7Z4F1 713 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 CCDC91Q7Z6B0 441 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 NOP9Q86U38 636 aaKnown RBP7.47□□□□□ -1.21
USP28-202ENST00000535607 RPAINQ86UA6 219 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 TICAM2Q86XR7 235 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 MFSD4AQ8N468 514 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 CELF2-AS1Q8N7Q2 184 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 RIN3Q8TB24 985 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 SHKBP1Q8TBC3 707 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 RABGGTAQ92696 567 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 GOLGA1Q92805 767 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 GTF3C6Q969F1 213 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 MYCBPQ99417 103 aaPredicted RBP7.47□□□□□ -1.21
USP28-202ENST00000535607 CCDC113Q9H0I3 377 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 ECHDC1Q9NTX5 307 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 TMOD3Q9NYL9 352 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 LRP2BPQ9P2M1 347 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 SUGT1Q9Y2Z0 365 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 LTBP3Q9NS15 1303 aa7.47□□□□□ -1.21
USP28-202ENST00000535607 MYH15Q9Y2K3 1946 aa7.46□□□□□ -1.21
USP28-202ENST00000535607 BRWD3Q6RI45 1802 aa7.46□□□□□ -1.21
USP28-202ENST00000535607 SBF2Q86WG5 1849 aa7.46□□□□□ -1.21
USP28-202ENST00000535607 IQCA1LA6NCM1 817 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 POLR3GO15318 223 aaPredicted RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 PDPK1O15530 556 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 CYP26A1O43174 497 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 PPM1BO75688 479 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 EOMESO95936 686 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 ITGA4P13612 1032 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 OAS2P29728 719 aaKnown RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 ADMP35318 185 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 ACTN2P35609 894 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 MAGEA9P43362 315 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 ZNF143P52747 638 aaPredicted RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 ICE2Q659A1 982 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 ZNF790Q6PG37 636 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 TTC5Q8N0Z6 440 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 CRACR2BQ8N4Y2 399 aaPredicted RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 MARCH10Q8NA82 808 aaPredicted RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 PI4K2BQ8TCG2 481 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 PPP1R13LQ8WUF5 828 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 APBA2Q99767 749 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 SDF4Q9BRK5 362 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 TACO1Q9BSH4 297 aaKnown RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 UTP14AQ9BVJ6 771 aaKnown RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 EPN3Q9H201 632 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 ZNF446Q9NWS9 450 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 TRMT1Q9NXH9 659 aaKnown RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 HOOK1Q9UJC3 728 aaKnown RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 RCOR1Q9UKL0 485 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms