RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 DYDC2Q96IM9 177 aa23.6■■□□□ 1.37
VPS28-212ENST00000530836 WDR64B1ANS9 1081 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 CCND3P30281 292 aaPredicted RBP23.59■■□□□ 1.37
VPS28-212ENST00000530836 SLC12A3P55017 1021 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 CYP4A11Q02928 519 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 ACVR2BQ13705 512 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 NCAPHQ15003 741 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 COBLL1Q53SF7 1204 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 TPH2Q8IWU9 490 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 SMAP1Q8IYB5 467 aaPredicted RBP23.59■■□□□ 1.37
VPS28-212ENST00000530836 KATNBL1Q9H079 304 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 RNF208Q9H0X6 261 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 RGL1Q9NZL6 768 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 PPP1R3GB7ZBB8 358 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 RGS20O76081 388 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 ADCY5O95622 1261 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 SSBP05455 408 aaKnown RBP eCLIP23.59■■□□□ 1.37
VPS28-212ENST00000530836 PLCB2Q00722 1185 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 ZSWIM4Q9H7M6 989 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 PAK6Q9NQU5 681 aaPredicted RBP23.59■■□□□ 1.37
VPS28-212ENST00000530836 KCND2Q9NZV8 630 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 PKD2L1Q9P0L9 805 aa23.59■■□□□ 1.37
VPS28-212ENST00000530836 LCTP09848 1927 aa23.58■■□□□ 1.37
VPS28-212ENST00000530836 TGFB3P10600 412 aa23.58■■□□□ 1.36
VPS28-212ENST00000530836 KCNA2P16389 499 aa23.58■■□□□ 1.36
VPS28-212ENST00000530836 GPBP1Q86WP2 473 aa23.58■■□□□ 1.36
VPS28-212ENST00000530836 CCDC65Q8IXS2 484 aa23.58■■□□□ 1.36
VPS28-212ENST00000530836 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.58■■□□□ 1.363e-6■■□□□ 14.1
VPS28-212ENST00000530836 SAMM50Q9Y512 469 aa23.58■■□□□ 1.36
VPS28-212ENST00000530836 PLXNA1Q9UIW2 1896 aa23.58■■□□□ 1.36
VPS28-212ENST00000530836 DDX39AO00148 427 aaKnown RBP23.57■■□□□ 1.36
VPS28-212ENST00000530836 ATP9AO75110 1047 aa23.57■■□□□ 1.36
VPS28-212ENST00000530836 LYPLA2O95372 231 aa23.57■■□□□ 1.36
VPS28-212ENST00000530836 CYP11B2P19099 503 aa23.57■■□□□ 1.36
VPS28-212ENST00000530836 CTTNQ14247 550 aaKnown RBP23.57■■□□□ 1.36
VPS28-212ENST00000530836 KCNV1Q6PIU1 500 aa23.57■■□□□ 1.36
VPS28-212ENST00000530836 LXNQ9BS40 222 aa23.57■■□□□ 1.36
VPS28-212ENST00000530836 VTA1Q9NP79 307 aa23.57■■□□□ 1.36
VPS28-212ENST00000530836 RWDD2AQ9UIY3 292 aa23.57■■□□□ 1.36
VPS28-212ENST00000530836 ZHX1Q9UKY1 873 aaPredicted RBP23.57■■□□□ 1.36
VPS28-212ENST00000530836 SEPT4O43236 478 aa23.56■■□□□ 1.36
VPS28-212ENST00000530836 DKC1O60832 514 aaKnown RBP eCLIP23.56■■□□□ 1.36
VPS28-212ENST00000530836 CNGA1P29973 690 aa23.56■■□□□ 1.36
VPS28-212ENST00000530836 QARSP47897 775 aaKnown RBP23.56■■□□□ 1.36
VPS28-212ENST00000530836 EEPD1Q7L9B9 569 aa23.56■■□□□ 1.36
VPS28-212ENST00000530836 DYMQ7RTS9 669 aa23.56■■□□□ 1.36
VPS28-212ENST00000530836 DNAJC19Q96DA6 116 aa23.56■■□□□ 1.36
VPS28-212ENST00000530836 TMEM106CQ9BVX2 250 aa23.56■■□□□ 1.36
VPS28-212ENST00000530836 KRT18P05783 430 aaKnown RBP23.55■■□□□ 1.36
VPS28-212ENST00000530836 PSMC6P62333 389 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 PAK1Q13153 545 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 SPATA1Q5VX52 437 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 TAPT1Q6NXT6 567 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 FBXO16Q8IX29 292 aaPredicted RBP23.55■■□□□ 1.36
VPS28-212ENST00000530836 ADSSL1Q8N142 457 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 DHTKD1Q96HY7 919 aaPredicted RBP23.55■■□□□ 1.36
VPS28-212ENST00000530836 TRIM5Q9C035 493 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 BHMT2Q9H2M3 363 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 JPH1Q9HDC5 661 aaPredicted RBP23.55■■□□□ 1.36
VPS28-212ENST00000530836 PCDHA10Q9Y5I2 948 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 PSMA7O14818 248 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 GJB1P08034 283 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 IDEP14735 1019 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 CD44P16070 742 aaKnown RBP23.55■■□□□ 1.36
VPS28-212ENST00000530836 SLC9A2Q9UBY0 812 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 FAM184BQ9ULE4 1060 aa23.55■■□□□ 1.36
VPS28-212ENST00000530836 SYNRGQ9UMZ2 1314 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 AKR1A1P14550 325 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 PRCPP42785 496 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 PSMC5P62195 406 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 EHHADHQ08426 723 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 CCDC144BQ3MJ40 725 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 C4orf19Q8IY42 314 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 SMYD4Q8IYR2 804 aaPredicted RBP23.54■■□□□ 1.36
VPS28-212ENST00000530836 DEFB118Q96PH6 123 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 PDGFCQ9NRA1 345 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 PANK4Q9NVE7 773 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 DDX20Q9UHI6 824 aaKnown RBP23.54■■□□□ 1.36
VPS28-212ENST00000530836 DBR1Q9UK59 544 aaKnown RBP23.54■■□□□ 1.36
VPS28-212ENST00000530836 GDAQ9Y2T3 454 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 NFE2L3Q9Y4A8 694 aa23.54■■□□□ 1.36
VPS28-212ENST00000530836 FRMD3A2A2Y4 597 aa23.53■■□□□ 1.36
VPS28-212ENST00000530836 CCDC85CA6NKD9 419 aa23.53■■□□□ 1.36
VPS28-212ENST00000530836 MSCO60682 206 aa23.53■■□□□ 1.36
VPS28-212ENST00000530836 NEDD9Q14511 834 aa23.53■■□□□ 1.36
VPS28-212ENST00000530836 LHX8Q68G74 356 aa23.53■■□□□ 1.36
VPS28-212ENST00000530836 KLHL10Q6JEL2 608 aa23.53■■□□□ 1.36
VPS28-212ENST00000530836 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.53■■□□□ 1.36
VPS28-212ENST00000530836 RBM47A0AV96 593 aaKnown RBP23.52■■□□□ 1.36
VPS28-212ENST00000530836 AP5Z1O43299 807 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 KIF20AO95235 890 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 CCNE2O96020 404 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 PSAPP07602 524 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 ARSHQ5FYA8 562 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 IQSEC1Q6DN90 963 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 SEPT14Q6ZU15 432 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 BANK1Q8NDB2 785 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 ATP6V0A1Q93050 837 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 LOXHD1Q8IVV2 1947 aa23.52■■□□□ 1.36
VPS28-212ENST00000530836 BICDL2A1A5D9 508 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms