RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-229	ENST00000528672	SMC5	Q8IY18	1101 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	SMC1B	Q8NDV3	1235 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	4.28	□□□□□ -1.72
CD44-229	ENST00000528672	TSPAN17	Q96FV3	270 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	RPS6KC1	Q96S38	1066 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	ELF4	Q99607	663 aa	Predicted RBP	4.28	□□□□□ -1.72
CD44-229	ENST00000528672	ZFYVE21	Q9BQ24	234 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	ORAI3	Q9BRQ5	295 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	KRTAP9-3	Q9BYQ3	159 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	CELF4	Q9BZC1	486 aa	Known RBP	4.28	□□□□□ -1.72
CD44-229	ENST00000528672	CDH19	Q9H159	772 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	OXSM	Q9NWU1	459 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	GOLGA6A	Q9NYA3	693 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	MBD1	Q9UIS9	605 aa	Predicted RBP	4.28	□□□□□ -1.72
CD44-229	ENST00000528672	ZNF180	Q9UJW8	692 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	NUDT5	Q9UKK9	219 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672	ZKSCAN5	Q9Y2L8	839 aa		4.28	□□□□□ -1.72
CD44-229	ENST00000528672		A0A1W2PQJ5	194 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672		B8ZZF3	427 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672		H7BY64	318 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	GABRD	O14764	452 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	GAS7	O60861	476 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	TADA3	O75528	432 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	PRKD3	O94806	890 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	FBXO21	O94952	628 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	ZBTB7A	O95365	584 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	F2	P00734	622 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	MYL1	P05976	194 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	C1QTNF9	P0C862	333 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	ATF2	P15336	505 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	SLC6A11	P48066	632 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	SRSF3	P84103	164 aa	Known RBP	4.27	□□□□□ -1.73
CD44-229	ENST00000528672	FAP	Q12884	760 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	OS9	Q13438	667 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-229	ENST00000528672	HDAC1	Q13547	482 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-229	ENST00000528672	UBE4A	Q14139	1066 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	TMEM132B	Q14DG7	1078 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	MLC1	Q15049	377 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	TARBP2	Q15633	366 aa	Known RBP	4.27	□□□□□ -1.73
CD44-229	ENST00000528672	KCNA10	Q16322	511 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	IQSEC1	Q6DN90	963 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	PPP4R4	Q6NUP7	873 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	ZC3H14	Q6PJT7	736 aa	Known RBP	4.27	□□□□□ -1.73
CD44-229	ENST00000528672	LRSAM1	Q6UWE0	723 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	ATG14	Q6ZNE5	492 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	LCNL1	Q6ZST4	164 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	TMC6	Q7Z403	805 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	TMEM151B	Q8IW70	566 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	C2orf69	Q8N8R5	385 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	TTC8	Q8TAM2	541 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	ERCC4	Q92889	916 aa	Predicted RBP	4.27	□□□□□ -1.73
CD44-229	ENST00000528672	KCNN1	Q92952	543 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	PEX11G	Q96HA9	241 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	SIGLEC10	Q96LC7	697 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	NOX5	Q96PH1	765 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	CAMKK2	Q96RR4	588 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	GCM1	Q9NP62	436 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	CABP5	Q9NP86	173 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	SLC6A20	Q9NP91	592 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	SIRT5	Q9NXA8	310 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	MAGEL2	Q9UJ55	1249 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	DSE	Q9UL01	958 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	NOB1	Q9ULX3	412 aa	Known RBP	4.27	□□□□□ -1.73
CD44-229	ENST00000528672	SRPK3	Q9UPE1	567 aa		4.27	□□□□□ -1.73
CD44-229	ENST00000528672	TNKS	O95271	1327 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	WNT9A	O14904	365 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	FKBP9	O95302	570 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	C4BPA	P04003	597 aa	Known RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	MME	P08473	750 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	ZSCAN20	P17040	1043 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	CCND1	P24385	295 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	LINC00310	P59036	64 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	LACTB	P83111	547 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	IRF9	Q00978	393 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	PDCD1	Q15116	288 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	CRY1	Q16526	586 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	PTPN21	Q16825	1174 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	ATP13A4	Q4VNC1	1196 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	CATSPERE	Q5SY80	951 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	FAM102B	Q5T8I3	360 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	MROH9	Q5TGP6	573 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	TMC5	Q6UXY8	1006 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	LIPI	Q6XZB0	460 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	FKBP9P1	Q75LS8	142 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	C11orf74	Q86VG3	221 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	DCP2	Q8IU60	420 aa	Known RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	TCEAL8	Q8IYN2	117 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	CHST14	Q8NCH0	376 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	UHMK1	Q8TAS1	419 aa	Known RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	ZNF526	Q8TF50	670 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	JPH3	Q8WXH2	748 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	CPA5	Q8WXQ8	436 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	RTF1	Q92541	710 aa	Known RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	ZSWIM3	Q96MP5	696 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	MENT	Q9BUN1	341 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	RTFDC1	Q9BY42	306 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-229	ENST00000528672	EPB41L1	Q9H4G0	881 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	CNTD2	Q9H8S5	307 aa		4.26	□□□□□ -1.73
CD44-229	ENST00000528672	ARNT2	Q9HBZ2	717 aa		4.26	□□□□□ -1.73

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