RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 KCNJ14Q9UNX9 436 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.51□□□□□ -0.57
VPS28-204ENST00000526054 KRT2P35908 639 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 TCF7P36402 384 aaPredicted RBP11.5□□□□□ -0.57
VPS28-204ENST00000526054 FOSBP53539 338 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 SP7Q8TDD2 431 aaPredicted RBP11.5□□□□□ -0.57
VPS28-204ENST00000526054 RASGRP4Q8TDF6 673 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 APBB2Q92870 758 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 SNX21Q969T3 373 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 GPRASP2Q96D09 838 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 CDHR1Q96JP9 859 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 C8orf76Q96K31 380 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 C1QTNF1Q9BXJ1 281 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 TELO2Q9Y4R8 837 aa11.5□□□□□ -0.57
VPS28-204ENST00000526054 CCDC194A0A1B0GVG4 234 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 K7ELQ4 463 aaPredicted RBP11.49□□□□□ -0.57
VPS28-204ENST00000526054 UPP2O95045 317 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 ZNF76P36508 570 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 SAFBQ15424 915 aaKnown RBP eCLIP11.49□□□□□ -0.57
VPS28-204ENST00000526054 PTPROQ16827 1216 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 TAF2Q6P1X5 1199 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 KRT25Q7Z3Z0 450 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 SAMD11Q96NU1 681 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 IFIH1Q9BYX4 1025 aaKnown RBP11.49□□□□□ -0.57
VPS28-204ENST00000526054 UBE2ZQ9H832 354 aaPredicted RBP11.49□□□□□ -0.57
VPS28-204ENST00000526054 RAPGEFL1Q9UHV5 662 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 SMC3Q9UQE7 1217 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 NRCAMQ92823 1304 aa11.49□□□□□ -0.57
VPS28-204ENST00000526054 ATG2AQ2TAZ0 1938 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.48□□□□□ -0.57
VPS28-204ENST00000526054 M0R2N6 131 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 ADAMTS3O15072 1205 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 MMP1P03956 469 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 CYP3A4P08684 503 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 KCNA2P16389 499 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 ITGB5P18084 799 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 MARK3P27448 753 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 ADAM17P78536 824 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 PPFIA1Q13136 1202 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 MTMR1Q13613 665 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 CUL4AQ13619 759 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 NONOQ15233 471 aaKnown RBP eCLIP11.48□□□□□ -0.57
VPS28-204ENST00000526054 NPY5RQ15761 445 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 EPC2Q52LR7 807 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 TIGD5Q53EQ6 642 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 TOP1MTQ969P6 601 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 MRPL38Q96DV4 380 aaKnown RBP11.48□□□□□ -0.57
VPS28-204ENST00000526054 MXRA8Q9BRK3 442 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 OSBPL7Q9BZF2 842 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 JADE2Q9NQC1 790 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 GJB4Q9NTQ9 266 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 ERAP1Q9NZ08 941 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 PKD2L1Q9P0L9 805 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 TUBE1Q9UJT0 475 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 UBIAD1Q9Y5Z9 338 aa11.48□□□□□ -0.57
VPS28-204ENST00000526054 MAFGO15525 162 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 ATP9AO75110 1047 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 GHRP10912 638 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 KCNA5P22460 613 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 GJB2P29033 226 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 SETQ01105 290 aaPredicted RBP11.47□□□□□ -0.57
VPS28-204ENST00000526054 GRIK4Q16099 956 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 CEP55Q53EZ4 464 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 FAM26DQ5JW98 314 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 RUFY4Q6ZNE9 571 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 NIPA1Q7RTP0 329 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 RSPH3Q86UC2 560 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 DIS3L2Q8IYB7 885 aaKnown RBP11.47□□□□□ -0.57
VPS28-204ENST00000526054 CRYGNQ8WXF5 182 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 SEPT1Q8WYJ6 367 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 GLG1Q92896 1179 aa11.47□□□□□ -0.57
VPS28-204ENST00000526054 ADGRA3Q8IWK6 1321 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 GSTTP1A0A1W2PQM5 241 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 H3BNC9 293 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 CHRNA1P02708 482 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 CIITAP33076 1130 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 USP11P51784 963 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 GUCY1B3Q02153 619 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 GPM6BQ13491 265 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 GNL2Q13823 731 aaKnown RBP11.46□□□□□ -0.57
VPS28-204ENST00000526054 LEXMQ3ZCV2 418 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 PIK3AP1Q6ZUJ8 805 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 RPAINQ86UA6 219 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 TMEM192Q8IY95 271 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 FBXO18Q8NFZ0 1043 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 TBCKQ8TEA7 893 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 INTS4Q96HW7 963 aaKnown RBP11.46□□□□□ -0.57
VPS28-204ENST00000526054 NAP1L4Q99733 375 aaKnown RBP11.46□□□□□ -0.57
VPS28-204ENST00000526054 SMARCAD1Q9H4L7 1026 aa11.46□□□□□ -0.57
VPS28-204ENST00000526054 JPH1Q9HDC5 661 aaPredicted RBP11.46□□□□□ -0.57
VPS28-204ENST00000526054 LOXHD1Q8IVV2 1947 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 KIAA1671Q9BY89 1806 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.45□□□□□ -0.58
VPS28-204ENST00000526054 MBLAC1A4D2B0 266 aaPredicted RBP11.45□□□□□ -0.58
VPS28-204ENST00000526054 BTBD18B2RXH4 712 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 H3BQV1 296 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 MEIS1O00470 390 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 HSP90AA1P07900 732 aaKnown RBP11.45□□□□□ -0.58
VPS28-204ENST00000526054 CTNNB1P35222 781 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 IGBP1P78318 339 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms