RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 MRGPRGQ86SM5 289 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 RBM12BQ8IXT5 1001 aaKnown RBP4.76□□□□□ -1.65
CSMD3-209ENST00000519485 ULK2Q8IYT8 1036 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 SLC43A3Q8NBI5 491 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 DCAF4Q8WV16 495 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 LARP4BQ92615 738 aaKnown RBP4.76□□□□□ -1.65
CSMD3-209ENST00000519485 OR14A2Q96R54 314 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 ZDHHC5Q9C0B5 715 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 ST7Q9NRC1 585 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 FBXO10Q9UK96 956 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 NR2E1Q9Y466 385 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 TNFRSF18Q9Y5U5 241 aa4.76□□□□□ -1.65
CSMD3-209ENST00000519485 NKRFO15226 690 aaKnown RBP eCLIP4.75□□□□□ -1.65
CSMD3-209ENST00000519485 FOXL1Q12952 345 aa4.75□□□□□ -1.65
CSMD3-209ENST00000519485 HNRNPA0Q13151 305 aaKnown RBP4.75□□□□□ -1.65
CSMD3-209ENST00000519485 SLC10A6Q3KNW5 377 aa4.75□□□□□ -1.65
CSMD3-209ENST00000519485 NAALADL2Q58DX5 795 aa4.75□□□□□ -1.65
CSMD3-209ENST00000519485 ZNF808Q8N4W9 903 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-209ENST00000519485 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.75□□□□□ -1.65
CSMD3-209ENST00000519485 HNRNPLLQ8WVV9 542 aaKnown RBP4.75□□□□□ -1.65
CSMD3-209ENST00000519485 AGAP2Q99490 1192 aa4.75□□□□□ -1.65
CSMD3-209ENST00000519485 NELFAQ9H3P2 528 aa4.75□□□□□ -1.65
CSMD3-209ENST00000519485 WDR26Q9H7D7 661 aa4.75□□□□□ -1.65
CSMD3-209ENST00000519485 MMRN2Q9H8L6 949 aa4.75□□□□□ -1.65
CSMD3-209ENST00000519485 CEP72Q9P209 647 aa4.75□□□□□ -1.65
CSMD3-209ENST00000519485 DMRT1Q9Y5R6 373 aa4.75□□□□□ -1.65
CSMD3-209ENST00000519485 CEP162Q5TB80 1403 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 A0A1W2PQU0 124 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 ESYT3A0FGR9 886 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 KRTAP23-1A1A580 65 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 STK10O94804 968 aaKnown RBP4.74□□□□□ -1.65
CSMD3-209ENST00000519485 GJB6O95452 261 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 COL6A2P12110 1019 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 STILQ15468 1287 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 ADGRE4PQ86SQ3 457 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 ZG16BQ96DA0 208 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 CRAMP1Q96RY5 1269 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 IER2Q9BTL4 223 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 TRIM55Q9BYV6 548 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 PLA2G3Q9NZ20 509 aa4.74□□□□□ -1.65
CSMD3-209ENST00000519485 PUF60Q9UHX1 559 aaKnown RBP4.74□□□□□ -1.65
CSMD3-209ENST00000519485 FANCIQ9NVI1 1328 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 FBLP22087 321 aaKnown RBP4.73□□□□□ -1.65
CSMD3-209ENST00000519485 HIBADHP31937 336 aaKnown RBP4.73□□□□□ -1.65
CSMD3-209ENST00000519485 GPR85P60893 370 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 EIF4HQ15056 248 aaKnown RBP4.73□□□□□ -1.65
CSMD3-209ENST00000519485 TBR1Q16650 682 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 TRIM68Q6AZZ1 485 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 STYK1Q6J9G0 422 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 USP30Q70CQ3 517 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 USP53Q70EK8 1073 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 VOPP1Q96AW1 172 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 SGSM3Q96HU1 749 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 GMLQ99445 158 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 TANGO6Q9C0B7 1094 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 SLC39A2Q9NP94 309 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 TLR9Q9NR96 1032 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 IGSF5Q9NSI5 407 aa4.73□□□□□ -1.65
CSMD3-209ENST00000519485 CDK11AQ9UQ88 783 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-209ENST00000519485 FAM47E-STBD1D6RA91 191 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 HMGCRP04035 888 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 ATP2B1P20020 1258 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 MSX2P35548 267 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-209ENST00000519485 RRADP55042 308 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 Q6ZPA2 131 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 ZNF627Q7L945 461 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 TMPRSS6Q8IU80 811 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 CKAP2LQ8IYA6 745 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 IFNL3Q8IZI9 196 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 NLGN4XQ8N0W4 816 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 CELF2-AS1Q8N7Q2 184 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 SH3RF2Q8TEC5 729 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 WNK4Q96J92 1243 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 GIT1Q9Y2X7 761 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 GOLGA3Q08378 1498 aa4.72□□□□□ -1.65
CSMD3-209ENST00000519485 CYP27B1O15528 508 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 SOD2P04179 222 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 FGFR1P11362 822 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 HHEXQ03014 270 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 COL10A1Q03692 680 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 HSP90AA2PQ14568 343 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-209ENST00000519485 NOLC1Q14978 699 aaKnown RBP eCLIP4.71□□□□□ -1.66
CSMD3-209ENST00000519485 NTRK3Q16288 839 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 DDR2Q16832 855 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 WDR72Q3MJ13 1102 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 LRCH2Q5VUJ6 765 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 GPR135Q8IZ08 494 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 THEMISQ8N1K5 641 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-209ENST00000519485 OR10A2Q9H208 303 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 C12orf65Q9H3J6 166 aaKnown RBP4.71□□□□□ -1.66
CSMD3-209ENST00000519485 PARPBPQ9NWS1 579 aa4.71□□□□□ -1.66
CSMD3-209ENST00000519485 TCRBV5S4A2TA0A5A2 114 aa4.7□□□□□ -1.66
CSMD3-209ENST00000519485 CCDC85CA6NKD9 419 aa4.7□□□□□ -1.66
CSMD3-209ENST00000519485 CCER2I3L3R5 266 aa4.7□□□□□ -1.66
CSMD3-209ENST00000519485 WNT9AO14904 365 aa4.7□□□□□ -1.66
CSMD3-209ENST00000519485 RAMP2O60895 175 aa4.7□□□□□ -1.66
CSMD3-209ENST00000519485 PTPN1P18031 435 aaKnown RBP4.7□□□□□ -1.66
CSMD3-209ENST00000519485 KRT4P19013 534 aa4.7□□□□□ -1.66
CSMD3-209ENST00000519485 GJA4P35212 333 aa4.7□□□□□ -1.66
CSMD3-209ENST00000519485 GTF2F1P35269 517 aaKnown RBP eCLIP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms