RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 GOLGA6AQ9NYA3 693 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF69Q9UC07 566 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SFMBT1Q9UHJ3 866 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 KCNG1Q9UIX4 513 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CROTQ9UKG9 612 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PNMA2Q9UL42 364 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAPRE3Q9UPY8 281 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 HDAC5Q9UQL6 1122 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 AKT3Q9Y243 479 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 INVSQ9Y283 1065 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF652Q9Y2D9 606 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 EFR3BQ9Y2G0 817 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 THRAP3Q9Y2W1 955 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GIT1Q9Y2X7 761 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MSRB2Q9Y3D2 182 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SPEF1Q9Y4P9 236 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PCDHB4Q9Y5E5 795 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MRVI1Q9Y6F6 885 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 A0A087X0B3 334 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 A0A0A6YYK5 440 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ANO9A1A5B4 782 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM221AA4D161 298 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PMS2P1A4D2B8 440 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CFAP69A5D8W1 941 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCDC85CA6NKD9 419 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 UPK3BL1B0FP48 263 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 B4E1Z4 1266 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 DIRC3C9JPN6 131 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 UPK3BL2E5RIL1 263 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCER2I3L3R5 266 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 OVOL3O00110 214 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 DDX3XO00571 662 aaKnown RBP eCLIP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 AQP7O14520 342 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 AURKAO14965 403 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 SMAD7O15105 426 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TLR3O15455 904 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 AKAP8O43823 692 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF500O60304 480 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 BRINP1O60477 761 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CDC14BO60729 498 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PAGE1O75459 146 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RFPL1O75677 317 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF202O95125 648 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZRANB2O95218 330 aaKnown RBP eCLIP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NPTXRO95502 500 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 EYA4O95677 639 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 C1RP00736 705 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 FOSP01100 380 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 AMHP03971 560 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 KRT1P04264 644 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NTRK1P04629 796 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TP53P04637 393 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CKMP06732 381 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MYL3P08590 195 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 IFIT2P09913 472 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NBPF7P0C2Y1 421 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 GLI4P10075 376 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MYCLP1P12525 358 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 GYPEP15421 78 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PHKG2P15735 406 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ATF3P18847 181 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TNFRSF1AP19438 455 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CR2P20023 1033 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 XPAP23025 273 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 IGFBP6P24592 240 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TACR1P25103 407 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MGAT1P26572 445 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CALRP27797 417 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NTF4P34130 210 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 THBS2P35442 1172 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 DDIT3P35638 169 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 FLT3P36888 993 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 LTBRP36941 435 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZEB1P37275 1124 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 HTR3AP46098 478 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 LIMS1P48059 325 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 GIPRP48546 466 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TRAPPC10P48553 1259 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPM1FP49593 454 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CDKN1CP49918 316 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RAB27AP51159 221 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 GUCY2FP51841 1108 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 EPHB3P54753 998 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 EPHB4P54760 987 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NCKAP1LP55160 1127 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CASP7P55210 303 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MRPS21P82921 87 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 HTRA3P83110 453 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 POU5F1Q01860 360 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PTH1RQ03431 593 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM160A1Q05DH4 1040 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MCL1Q07820 350 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ITKQ08881 620 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 LMOD3Q0VAK6 560 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 LSAMPQ13449 338 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 FOXE3Q13461 319 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PICALMQ13492 652 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 SQSTM1Q13501 440 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TUBA3CQ13748 450 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MYBPC2Q14324 1141 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms