RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 BBOF1Q8ND07 529 aa13.71□□□□□ -0.22
USP53-209ENST00000514665 EIF3CQ99613 913 aaKnown RBP13.71□□□□□ -0.22
USP53-209ENST00000514665 ADPGKQ9BRR6 497 aa13.71□□□□□ -0.22
USP53-209ENST00000514665 PLA2G12BQ9BX93 195 aa13.71□□□□□ -0.22
USP53-209ENST00000514665 LRRD1A4D1F6 860 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 F5H6K3 240 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 CRKP46108 304 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 KLRC3Q07444 240 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 TMED2Q15363 201 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 HIBCHQ6NVY1 386 aaPredicted RBP13.7□□□□□ -0.22
USP53-209ENST00000514665 SESTD1Q86VW0 696 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 MARCH10Q8NA82 808 aaPredicted RBP13.7□□□□□ -0.22
USP53-209ENST00000514665 TRPC5Q9UL62 973 aaPredicted RBP13.7□□□□□ -0.22
USP53-209ENST00000514665 SALL3Q9BXA9 1300 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 PTPRUQ92729 1446 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 SAT1P21673 171 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 KLHL29Q96CT2 875 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 CALN1Q9BXU9 219 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 ZMYND12Q9H0C1 365 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 CCDC188H7C350 402 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 PPM1FP49593 454 aaPredicted RBP13.7□□□□□ -0.22
USP53-209ENST00000514665 IL9RQ01113 521 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 NR1I3Q14994 352 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 LMTK2Q8IWU2 1503 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 ADGRF4Q8IZF3 695 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 CAPN11Q9UMQ6 739 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 AK9Q5TCS8 1911 aa13.7□□□□□ -0.22
USP53-209ENST00000514665 CAPN9O14815 690 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 BAG2O95816 211 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 TRIM49P0CI25 452 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 TRIM49CP0CI26 452 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 HSPA6P17066 643 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 ZNF394Q53GI3 561 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 ADSSL1Q8N142 457 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 BANK1Q8NDB2 785 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 SPATA4Q8NEY3 305 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 GDAP1Q8TB36 358 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 APOL6Q9BWW8 343 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 A0A1W2PQC6 194 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 FRMD3A2A2Y4 597 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 DPYDQ12882 1025 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 AP3B2Q13367 1082 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 TRIM50Q86XT4 487 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.69□□□□□ -0.22
USP53-209ENST00000514665 FAM149B1Q96BN6 582 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 SEPT10Q9P0V9 454 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 LIMA1Q9UHB6 759 aaKnown RBP13.69□□□□□ -0.22
USP53-209ENST00000514665 INHBAP08476 426 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 TPD52P55327 224 aaPredicted RBP13.69□□□□□ -0.22
USP53-209ENST00000514665 SNCBQ16143 134 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 KNOP1Q1ED39 458 aaKnown RBP13.69□□□□□ -0.22
USP53-209ENST00000514665 ZBTB33Q86T24 672 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 CFAP61Q8NHU2 1237 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 HEMGNQ9BXL5 484 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 ZNF341Q9BYN7 854 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 CCSER1Q9C0I3 900 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 ODF2LQ9ULJ1 636 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 NEXMIFQ5QGS0 1516 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 WDR91A4D1P6 747 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 CRCPO75575 148 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 KRT1P04264 644 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 PPP2R5AQ15172 486 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 MUM1Q2TAK8 710 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 DNAJC24Q6P3W2 148 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 PDXDC2PQ6P474 469 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 CCDC125Q86Z20 511 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 RFX6Q8HWS3 928 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 GLYCTKQ8IVS8 523 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 SEPT12Q8IYM1 358 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 THOC1Q96FV9 657 aaKnown RBP13.69□□□□□ -0.22
USP53-209ENST00000514665 TMEM60Q9H2L4 133 aa13.69□□□□□ -0.22
USP53-209ENST00000514665 HMGB1P1B2RPK0 211 aaPredicted RBP13.68□□□□□ -0.22
USP53-209ENST00000514665 NT5C2P49902 561 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 SLC12A2P55011 1212 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 BASP1P80723 227 aaKnown RBP13.68□□□□□ -0.22
USP53-209ENST00000514665 NME8Q8N427 588 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 HAUS1Q96CS2 278 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 DYDC2Q96IM9 177 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 EFCC1Q9HA90 598 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 TFR2Q9UP52 801 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 TNS3Q68CZ2 1445 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 LMNB2Q03252 620 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 CUL1Q13616 776 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 KCNB1Q14721 858 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 NUGGCQ68CJ6 796 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 SCARA5Q6ZMJ2 495 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 ZNF34Q8IZ26 560 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 COG1Q8WTW3 980 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 RIN2Q8WYP3 895 aaPredicted RBP13.68□□□□□ -0.22
USP53-209ENST00000514665 SH2D3AQ9BRG2 576 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 LRRC1Q9BTT6 524 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 K7ERI5 159 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 NPR1P16066 1061 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 KCNJ6P48051 423 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 RWDD2BP57060 319 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 SARNPP82979 210 aaKnown RBP13.68□□□□□ -0.22
USP53-209ENST00000514665 IFRD2Q12894 506 aaPredicted RBP13.68□□□□□ -0.22
USP53-209ENST00000514665 BBS9Q3SYG4 887 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 PADI6Q6TGC4 694 aa13.68□□□□□ -0.22
USP53-209ENST00000514665 CCT6BQ92526 530 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms