RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 CD300LDQ6UXZ3 194 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 OTOP1Q7RTM1 612 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 MTDHQ86UE4 582 aaKnown RBP5.37□□□□□ -1.55
NUP54-212ENST00000513248 NIM1KQ8IY84 436 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 FAM26EQ8N5C1 309 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 TTLL11Q8NHH1 800 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 PHOSPHO1Q8TCT1 267 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 DDX1Q92499 740 aaKnown RBP5.37□□□□□ -1.55
NUP54-212ENST00000513248 GORASP1Q9BQQ3 440 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 SMURF1Q9HCE7 757 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 PCDH18Q9HCL0 1135 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 MYOTQ9UBF9 498 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 ASH2LQ9UBL3 628 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 PHLDB1Q86UU1 1377 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 CDK13Q14004 1512 aaKnown RBP5.37□□□□□ -1.55
NUP54-212ENST00000513248 HECW1Q76N89 1606 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 GSG1L2A8MUP6 293 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 C1QTNF3-AMACRE9PGA6 284 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 TRAF5O00463 557 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 ITGB3P05106 788 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 PYGMP11217 842 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 GNAT1P11488 350 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 IGFALSP35858 605 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 ADAM17P78536 824 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 GPR19Q15760 415 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 C21orf62-AS1Q17RA5 79 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 EFCAB2Q5VUJ9 269 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 FERMT3Q86UX7 667 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 CARFQ8N187 725 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 TTC9BQ8N6N2 239 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 ARRDC4Q8NCT1 418 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 ZNF526Q8TF50 670 aaPredicted RBP5.36□□□□□ -1.55
NUP54-212ENST00000513248 CLEC4DQ8WXI8 215 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 ZBTB8AQ96BR9 441 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 MFSD3Q96ES6 412 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 KCNJ15Q99712 375 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 NGRNQ9NPE2 291 aaKnown RBP5.36□□□□□ -1.55
NUP54-212ENST00000513248 DTLQ9NZJ0 730 aa5.36□□□□□ -1.55
NUP54-212ENST00000513248 PPRC1Q5VV67 1664 aaKnown RBP5.35□□□□□ -1.55
NUP54-212ENST00000513248 FANCAO15360 1455 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 DENND4BO75064 1496 aaPredicted RBP5.35□□□□□ -1.55
NUP54-212ENST00000513248 ADGRL1O94910 1474 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 NEO1Q92859 1461 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 A0A1B0GTL3 188 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 CCDC66A2RUB6 948 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 B4E1Z4 1266 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 MAN2B1O00754 1011 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 VIL1P09327 827 aaKnown RBP5.35□□□□□ -1.55
NUP54-212ENST00000513248 COL6A2P12110 1019 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 PDE6AP16499 860 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 GJA9P57773 515 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 NKX3-2P78367 333 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 SPIRE1Q08AE8 756 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 SMAD4Q13485 552 aaKnown RBP5.35□□□□□ -1.55
NUP54-212ENST00000513248 CR1LQ2VPA4 569 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 LRRTM3Q86VH5 581 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 OSTM1Q86WC4 334 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 THNSL2Q86YJ6 484 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 ADGRG2Q8IZP9 1017 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 LINC00482Q8N8I6 264 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 TOE1Q96GM8 510 aaKnown RBP5.35□□□□□ -1.55
NUP54-212ENST00000513248 RBM15Q96T37 977 aaKnown RBP eCLIP5.35□□□□□ -1.55
NUP54-212ENST00000513248 SYT3Q9BQG1 590 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 C11orf84Q9BUA3 381 aaPredicted RBP5.35□□□□□ -1.55
NUP54-212ENST00000513248 C1QTNF3Q9BXJ4 246 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 SMPD4Q9NXE4 827 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 COQ6Q9Y2Z9 468 aa5.35□□□□□ -1.55
NUP54-212ENST00000513248 ABCA9Q8IUA7 1624 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 AKNAQ7Z591 1439 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 SBNO2Q9Y2G9 1366 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 SLC27A2O14975 620 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 GLRX3O76003 335 aaKnown RBP5.34□□□□□ -1.55
NUP54-212ENST00000513248 LRG1P02750 347 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 SRGAP2CP0DJJ0 459 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 ZBTB48P10074 688 aaPredicted RBP5.34□□□□□ -1.55
NUP54-212ENST00000513248 CNR2P34972 360 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 THBS2P35442 1172 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 MASP1P48740 699 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 ITGA1P56199 1179 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 JAM2P57087 298 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 ZXDAP98168 799 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 TMEM177Q53S58 311 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 CREB3L3Q68CJ9 461 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 CDCA2Q69YH5 1023 aaPredicted RBP5.34□□□□□ -1.55
NUP54-212ENST00000513248 FSTL4Q6MZW2 842 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 PROSER1Q86XN7 944 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 KIF18BQ86Y91 864 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 NOSTRINQ8IVI9 506 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 ZC3H7AQ8IWR0 971 aaKnown RBP5.34□□□□□ -1.55
NUP54-212ENST00000513248 TRIM48Q8IWZ4 208 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 DHX37Q8IY37 1157 aaKnown RBP5.34□□□□□ -1.55
NUP54-212ENST00000513248 IGSF22Q8N9C0 903 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 KYQ8NBH2 561 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 TARS2Q9BW92 718 aaKnown RBP5.34□□□□□ -1.55
NUP54-212ENST00000513248 SPATA6Q9NWH7 488 aaPredicted RBP5.34□□□□□ -1.55
NUP54-212ENST00000513248 NTMQ9P121 344 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 SRPK3Q9UPE1 567 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 WASF3Q9UPY6 502 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 DUSP10Q9Y6W6 482 aa5.34□□□□□ -1.55
NUP54-212ENST00000513248 ARAP3Q8WWN8 1544 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms