RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 EPHA7Q15375 998 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 ALX1Q15699 326 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PPFIBP2Q8ND30 876 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 FBXO18Q8NFZ0 1043 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 STAMQ92783 540 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 EMILIN3Q9NT22 766 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PCDHA10Q9Y5I2 948 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PSMD14O00487 310 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 SLC26A4O43511 780 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 HOXA13P31271 388 aaPredicted RBP4.59□□□□□ -1.68
VCAN-209ENST00000513016 TYW1BQ6NUM6 668 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 ERICH1Q86X53 443 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 SEPT8Q92599 483 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 PPP1R16BQ96T49 567 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 PLA2G12BQ9BX93 195 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 MROH8Q9H579 483 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 TBXAS1P24557 533 aaPredicted RBP4.59□□□□□ -1.68
VCAN-209ENST00000513016 SOX5P35711 763 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 MXD4Q14582 209 aaPredicted RBP4.59□□□□□ -1.68
VCAN-209ENST00000513016 MAN2A1Q16706 1144 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 DGKDQ16760 1214 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 C10orf76Q5T2E6 689 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 SWSAP1Q6NVH7 229 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 LDHDQ86WU2 507 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 MARCH10Q8NA82 808 aaPredicted RBP4.59□□□□□ -1.68
VCAN-209ENST00000513016 AFG1LQ8WV93 481 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 TSC1Q92574 1164 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 SYMPKQ92797 1274 aaKnown RBP4.59□□□□□ -1.68
VCAN-209ENST00000513016 P2RX5Q93086 422 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 TMEM47Q9BQJ4 181 aa4.59□□□□□ -1.68
VCAN-209ENST00000513016 TRIM45Q9H8W5 580 aaPredicted RBP4.59□□□□□ -1.68
VCAN-209ENST00000513016 SPATA31E1Q6ZUB1 1445 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 BNIP3LO60238 219 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 KDM1AO60341 852 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 HSPA6P17066 643 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 ABCB4P21439 1286 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 PRDX5P30044 214 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 IFNA8P32881 189 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 ADCY8P40145 1251 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 PAPOLAP51003 745 aaKnown RBP4.58□□□□□ -1.68
VCAN-209ENST00000513016 CCDC121Q6ZUS5 278 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 SPATA2LQ8IUW3 424 aaPredicted RBP4.58□□□□□ -1.68
VCAN-209ENST00000513016 TMEM35BQ8NCS4 154 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 HDAC11Q96DB2 347 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 EPSTI1Q96J88 318 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 NUDCD1Q96RS6 583 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 DEFB129Q9H1M3 183 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 GABBR1Q9UBS5 961 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 SYNGAP1Q96PV0 1343 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 CD163L1Q9NR16 1453 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 H7C4K7 107 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 ITGA4P13612 1032 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 ATF2P15336 505 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 EEF1GP26641 437 aaKnown RBP4.58□□□□□ -1.68
VCAN-209ENST00000513016 ARL4DP49703 201 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 USP11P51784 963 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 RBM10P98175 930 aaKnown RBP4.58□□□□□ -1.68
VCAN-209ENST00000513016 STILQ15468 1287 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 XKR3Q5GH77 459 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 MAP3K21Q5TCX8 1036 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 ARHGEF18Q6ZSZ5 1173 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 USP50Q70EL3 339 aaPredicted RBP4.58□□□□□ -1.68
VCAN-209ENST00000513016 RHPN2Q8IUC4 686 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 OSBPL3Q9H4L5 887 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 VCPKMTQ9H867 229 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 RRAGCQ9HB90 399 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 ZSWIM5Q9P217 1185 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 GOLGA8SH3BPF8 625 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 NKRFO15226 690 aaKnown RBP eCLIP4.58□□□□□ -1.68
VCAN-209ENST00000513016 CD4P01730 458 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 MTMR2Q13614 643 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 TFDP2Q14188 446 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 PTPAQ15257 358 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 CCDC62Q6P9F0 684 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 MICALL1Q8N3F8 863 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 DNAAF3Q8N9W5 541 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 UCMAQ8WVF2 138 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 VCXQ9H320 206 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 PCIF1Q9H4Z3 704 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 USH1CQ9Y6N9 552 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 WDR19Q8NEZ3 1342 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 USP42Q9H9J4 1324 aaKnown RBP4.58□□□□□ -1.68
VCAN-209ENST00000513016 PRDM15P57071 1507 aaPredicted RBP4.58□□□□□ -1.68
VCAN-209ENST00000513016 A0A1W2PQ27 194 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 A0A1W2PQ64 194 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 A0A1W2PQD8 194 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 PRRG1O14668 218 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 TROVE2P10155 538 aaKnown RBP eCLIP4.58□□□□□ -1.68
VCAN-209ENST00000513016 RFC5P40937 340 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 PTH1RQ03431 593 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 GRM4Q14833 912 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 GNASQ5JWF2 1037 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 TRIM42Q8IWZ5 723 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 ZNF653Q96CK0 615 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 IFT43Q96FT9 208 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.58□□□□□ -1.68
VCAN-209ENST00000513016 EVA1BQ9NVM1 165 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 HYOU1Q9Y4L1 999 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 AGLP35573 1532 aa4.58□□□□□ -1.68
VCAN-209ENST00000513016 PI4K2BG5E9Z4 385 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms