RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 C16orf59Q7L2K0 433 aa18.44■□□□□ 0.54
SF3A1-209ENST00000496189 TNFRSF25Q93038 417 aa18.44■□□□□ 0.54
SF3A1-209ENST00000496189 UNC45AQ9H3U1 944 aa18.44■□□□□ 0.54
SF3A1-209ENST00000496189 MAFBQ9Y5Q3 323 aaPredicted RBP18.44■□□□□ 0.54
SF3A1-209ENST00000496189 RANBP2P49792 3224 aaKnown RBP18.44■□□□□ 0.54
SF3A1-209ENST00000496189 MBLAC1A4D2B0 266 aaPredicted RBP18.43■□□□□ 0.54
SF3A1-209ENST00000496189 EDIL3O43854 480 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 NEMFO60524 1076 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 EFCAB14O75071 495 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 BAIAP3O94812 1187 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 CTSHP09668 335 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 PDCP20941 246 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 ADAM17P78536 824 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 CALCRLQ16602 461 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 TRIM71Q2Q1W2 868 aaKnown RBP18.43■□□□□ 0.54
SF3A1-209ENST00000496189 CNKSR3Q6P9H4 555 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 TRMT1LQ7Z2T5 733 aaKnown RBP18.43■□□□□ 0.54
SF3A1-209ENST00000496189 LRCH3Q96II8 777 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 KCNMB3Q9NPA1 279 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 IGSF9BQ9UPX0 1349 aa18.43■□□□□ 0.54
SF3A1-209ENST00000496189 FAM205CA6NFA0 338 aa18.42■□□□□ 0.54
SF3A1-209ENST00000496189 SOX1O00570 391 aaPredicted RBP18.42■□□□□ 0.54
SF3A1-209ENST00000496189 ATP2B1P20020 1258 aa18.42■□□□□ 0.54
SF3A1-209ENST00000496189 ORC2Q13416 577 aaPredicted RBP18.42■□□□□ 0.54
SF3A1-209ENST00000496189 IKBKEQ14164 716 aa18.42■□□□□ 0.54
SF3A1-209ENST00000496189 EARS2Q5JPH6 523 aaKnown RBP18.42■□□□□ 0.54
SF3A1-209ENST00000496189 IER5Q5VY09 327 aa18.42■□□□□ 0.54
SF3A1-209ENST00000496189 LARP1BQ659C4 914 aaKnown RBP18.42■□□□□ 0.54
SF3A1-209ENST00000496189 POTEDQ86YR6 584 aa18.42■□□□□ 0.54
SF3A1-209ENST00000496189 NOSTRINQ8IVI9 506 aa18.42■□□□□ 0.54
SF3A1-209ENST00000496189 GJA10Q969M2 543 aa18.42■□□□□ 0.54
SF3A1-209ENST00000496189 FAM49AQ9H0Q0 323 aaPredicted RBP18.42■□□□□ 0.54
SF3A1-209ENST00000496189 PCDHA2Q9Y5H9 948 aa18.42■□□□□ 0.54
SF3A1-209ENST00000496189 TRIP12Q14669 1992 aaPredicted RBP18.42■□□□□ 0.54
SF3A1-209ENST00000496189 OATP04181 439 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 TMOD1P28289 359 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 PRKCEQ02156 737 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 PPP2R5CQ13362 524 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 ZNF697Q5TEC3 545 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 MCTP1Q6DN14 999 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 RPAINQ86UA6 219 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 SEPT8Q92599 483 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 WNT8BQ93098 351 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 MSRAQ9UJ68 235 aa18.41■□□□□ 0.54
SF3A1-209ENST00000496189 MYH9P35579 1960 aaKnown RBP18.41■□□□□ 0.54
SF3A1-209ENST00000496189 SMIM35A0A1B0GVV1 85 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 MAGEB2O15479 319 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 CXCL10P02778 98 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 KLRC1P26715 233 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 TRAPPC10P48553 1259 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 RAB30Q15771 203 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 MARCH8Q5T0T0 291 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 RASIP1Q5U651 963 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 NCAPH2Q6IBW4 605 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 MTHFD1LQ6UB35 978 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 RUFY4Q6ZNE9 571 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 NME8Q8N427 588 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 TRAPPC12Q8WVT3 735 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 DNAJB3Q8WWF6 145 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 SLC9A7Q96T83 725 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 PCDHA12Q9UN75 941 aa18.4■□□□□ 0.54
SF3A1-209ENST00000496189 SCN5AQ14524 2016 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 ABHD14A-ACY1A0A1B0GW23 586 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 KIF28PB7ZC32 967 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 NBNO60934 754 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 ATP2A2P16615 1042 aaKnown RBP18.39■□□□□ 0.53
SF3A1-209ENST00000496189 MCM7P33993 719 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 PSMC5P62195 406 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 BECN1Q14457 450 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 XKR3Q5GH77 459 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 METTL13Q8N6R0 699 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 APBB2Q92870 758 aa18.39■□□□□ 0.53
SF3A1-209ENST00000496189 SEPT9Q9UHD8 586 aaPredicted RBP18.39■□□□□ 0.53
SF3A1-209ENST00000496189 P4HBP07237 508 aaKnown RBP18.38■□□□□ 0.53
SF3A1-209ENST00000496189 TXKP42681 527 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 QARSP47897 775 aaKnown RBP18.38■□□□□ 0.53
SF3A1-209ENST00000496189 MRPS6P82932 125 aaKnown RBP18.38■□□□□ 0.53
SF3A1-209ENST00000496189 TBC1D8BQ0IIM8 1120 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 EPHA7Q15375 998 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 TMEM266Q2M3C6 531 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 FAM26DQ5JW98 314 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 TTC38Q5R3I4 469 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 DEFB123Q8N688 67 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 PHOSPHO2Q8TCD6 241 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 HAS1Q92839 578 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 CCDC43Q96MW1 224 aaKnown RBP18.38■□□□□ 0.53
SF3A1-209ENST00000496189 MAP7D2Q96T17 732 aa18.38■□□□□ 0.53
SF3A1-209ENST00000496189 TTC12Q9H892 705 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-209ENST00000496189 CXXC1Q9P0U4 656 aaPredicted RBP18.38■□□□□ 0.53
SF3A1-209ENST00000496189 TMEM265A0A087WTH1 108 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 DDX11L8A8MPP1 907 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 PDIA4P13667 645 aaKnown RBP18.37■□□□□ 0.53
SF3A1-209ENST00000496189 ATP4AP20648 1035 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 U2AF2P26368 475 aaKnown RBP eCLIP18.37■□□□□ 0.53
SF3A1-209ENST00000496189 ODR4Q5SWX8 454 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 FAM109BQ6ICB4 259 aaPredicted RBP18.37■□□□□ 0.53
SF3A1-209ENST00000496189 TRAF7Q6Q0C0 670 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 B3GNT9Q6UX72 402 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 EXOC8Q8IYI6 725 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 ZNF710Q8N1W2 664 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms