RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 FAM167AQ96KS9 214 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 NRBP2Q9NSY0 501 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 PCDHA2Q9Y5H9 948 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.54■□□□□ 0.72
MDC1-206ENST00000489540 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.54■□□□□ 0.72
MDC1-206ENST00000489540 SOX1O00570 391 aaPredicted RBP19.54■□□□□ 0.72
MDC1-206ENST00000489540 CXCL10P02778 98 aa19.54■□□□□ 0.72
MDC1-206ENST00000489540 U2AF2P26368 475 aaKnown RBP eCLIP19.54■□□□□ 0.72
MDC1-206ENST00000489540 CUL4AQ13619 759 aa19.54■□□□□ 0.72
MDC1-206ENST00000489540 GPNMBQ14956 572 aa19.54■□□□□ 0.72
MDC1-206ENST00000489540 CALCRLQ16602 461 aa19.54■□□□□ 0.72
MDC1-206ENST00000489540 GPR153Q6NV75 609 aa19.54■□□□□ 0.72
MDC1-206ENST00000489540 OTOP2Q7RTS6 562 aa19.54■□□□□ 0.72
MDC1-206ENST00000489540 COL1A2P08123 1366 aa19.54■□□□□ 0.72
MDC1-206ENST00000489540 DOCK5Q9H7D0 1870 aa19.54■□□□□ 0.72
MDC1-206ENST00000489540 IGSF9BQ9UPX0 1349 aa19.54■□□□□ 0.72
MDC1-206ENST00000489540 NEMFO60524 1076 aa19.53■□□□□ 0.72
MDC1-206ENST00000489540 TRAPPC10P48553 1259 aa19.53■□□□□ 0.72
MDC1-206ENST00000489540 ORC2Q13416 577 aaPredicted RBP19.53■□□□□ 0.72
MDC1-206ENST00000489540 FAM26DQ5JW98 314 aa19.53■□□□□ 0.72
MDC1-206ENST00000489540 RUFY4Q6ZNE9 571 aa19.53■□□□□ 0.72
MDC1-206ENST00000489540 VAV3Q9UKW4 847 aa19.53■□□□□ 0.72
MDC1-206ENST00000489540 CEP131Q9UPN4 1083 aa19.53■□□□□ 0.72
MDC1-206ENST00000489540 NBNO60934 754 aa19.52■□□□□ 0.72
MDC1-206ENST00000489540 ATP2B1P20020 1258 aa19.52■□□□□ 0.72
MDC1-206ENST00000489540 KLRC1P26715 233 aa19.52■□□□□ 0.72
MDC1-206ENST00000489540 SMAD3P84022 425 aaKnown RBP19.52■□□□□ 0.72
MDC1-206ENST00000489540 MTHFD1LQ6UB35 978 aa19.52■□□□□ 0.72
MDC1-206ENST00000489540 NME8Q8N427 588 aa19.52■□□□□ 0.72
MDC1-206ENST00000489540 LRCH3Q96II8 777 aa19.52■□□□□ 0.72
MDC1-206ENST00000489540 NOL7Q9UMY1 257 aaKnown RBP19.52■□□□□ 0.72
MDC1-206ENST00000489540 PCDHA12Q9UN75 941 aa19.52■□□□□ 0.72
MDC1-206ENST00000489540 SMIM35A0A1B0GVV1 85 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 H3BQV1 296 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 ZNF862O60290 1169 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 DKC1O60832 514 aaKnown RBP eCLIP19.51■□□□□ 0.71
MDC1-206ENST00000489540 OATP04181 439 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 MCM7P33993 719 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 TRAPPC12Q8WVT3 735 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 DNAJB3Q8WWF6 145 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 SLC4A7Q9Y6M7 1214 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 ZBBXA8MT70 800 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 ZBTB42B2RXF5 422 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 KIF28PB7ZC32 967 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 EML1O00423 815 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 MAGEB2O15479 319 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 BAIAP3O94812 1187 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 PSMC5P62195 406 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 PRKCEQ02156 737 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 MBTPS1Q14703 1052 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 EPHA7Q15375 998 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 XKR3Q5GH77 459 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 IER5Q5VY09 327 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 LARP1BQ659C4 914 aaKnown RBP19.51■□□□□ 0.71
MDC1-206ENST00000489540 CNKSR3Q6P9H4 555 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 TRMT1LQ7Z2T5 733 aaKnown RBP19.51■□□□□ 0.71
MDC1-206ENST00000489540 MTMR9Q96QG7 549 aa19.51■□□□□ 0.71
MDC1-206ENST00000489540 CXXC1Q9P0U4 656 aaPredicted RBP19.51■□□□□ 0.71
MDC1-206ENST00000489540 WNT7AO00755 349 aa19.5■□□□□ 0.71
MDC1-206ENST00000489540 P4HBP07237 508 aaKnown RBP19.5■□□□□ 0.71
MDC1-206ENST00000489540 CTSHP09668 335 aa19.5■□□□□ 0.71
MDC1-206ENST00000489540 QARSP47897 775 aaKnown RBP19.5■□□□□ 0.71
MDC1-206ENST00000489540 ZNF174Q15697 407 aa19.5■□□□□ 0.71
MDC1-206ENST00000489540 UGCGQ16739 394 aa19.5■□□□□ 0.71
MDC1-206ENST00000489540 TTC38Q5R3I4 469 aa19.5■□□□□ 0.71
MDC1-206ENST00000489540 MCTP1Q6DN14 999 aa19.5■□□□□ 0.71
MDC1-206ENST00000489540 SNX21Q969T3 373 aa19.5■□□□□ 0.71
MDC1-206ENST00000489540 FAM49AQ9H0Q0 323 aaPredicted RBP19.5■□□□□ 0.71
MDC1-206ENST00000489540 TTC12Q9H892 705 aaPredicted RBP19.5■□□□□ 0.71
MDC1-206ENST00000489540 ABHD14A-ACY1A0A1B0GW23 586 aa19.49■□□□□ 0.71
MDC1-206ENST00000489540 K7ELQ4 463 aaPredicted RBP19.49■□□□□ 0.71
MDC1-206ENST00000489540 EFCAB14O75071 495 aa19.49■□□□□ 0.71
MDC1-206ENST00000489540 CHRNA1P02708 482 aa19.49■□□□□ 0.71
MDC1-206ENST00000489540 TXKP42681 527 aa19.49■□□□□ 0.71
MDC1-206ENST00000489540 SPIRE1Q08AE8 756 aa19.49■□□□□ 0.71
MDC1-206ENST00000489540 IKBKEQ14164 716 aa19.49■□□□□ 0.71
MDC1-206ENST00000489540 ZBTB10Q96DT7 871 aa19.49■□□□□ 0.71
MDC1-206ENST00000489540 INTS4Q96HW7 963 aaKnown RBP19.49■□□□□ 0.71
MDC1-206ENST00000489540 NIFKQ9BYG3 293 aaKnown RBP19.49■□□□□ 0.71
MDC1-206ENST00000489540 M0QZ92 97 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 C22orf31O95567 290 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 PDCP20941 246 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 MRPS6P82932 125 aaKnown RBP19.48■□□□□ 0.71
MDC1-206ENST00000489540 MGAT3Q09327 533 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 PLEKHG4Q58EX7 1191 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 NCAPH2Q6IBW4 605 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 BANK1Q8NDB2 785 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 PHOSPHO2Q8TCD6 241 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 SEPT8Q92599 483 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 TMEM60Q9H2L4 133 aa19.48■□□□□ 0.71
MDC1-206ENST00000489540 DDX11L8A8MPP1 907 aa19.47■□□□□ 0.71
MDC1-206ENST00000489540 STBD1O95210 358 aa19.47■□□□□ 0.71
MDC1-206ENST00000489540 ATP2A2P16615 1042 aaKnown RBP19.47■□□□□ 0.71
MDC1-206ENST00000489540 TMOD1P28289 359 aa19.47■□□□□ 0.71
MDC1-206ENST00000489540 FAM109BQ6ICB4 259 aaPredicted RBP19.47■□□□□ 0.71
MDC1-206ENST00000489540 KIAA0319LQ8IZA0 1049 aa19.47■□□□□ 0.71
MDC1-206ENST00000489540 DBF4BQ8NFT6 615 aa19.47■□□□□ 0.71
MDC1-206ENST00000489540 CDY2AQ9Y6F7 541 aa19.47■□□□□ 0.71
MDC1-206ENST00000489540 SQORQ9Y6N5 450 aa19.47■□□□□ 0.71
MDC1-206ENST00000489540 OR52Z1P0C646 297 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms