RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 JAG1P78504 1218 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 EPM2AIP1Q7L775 607 aaPredicted RBP19.69■□□□□ 0.74
VIM-206ENST00000487938 FRMD5Q7Z6J6 570 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 RUSC1Q9BVN2 902 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 TMX4Q9H1E5 349 aaPredicted RBP19.69■□□□□ 0.74
VIM-206ENST00000487938 ZNF219Q9P2Y4 722 aaPredicted RBP19.69■□□□□ 0.74
VIM-206ENST00000487938 SLC26A4O43511 780 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 HEXIM1O94992 359 aaKnown RBP19.68■□□□□ 0.74
VIM-206ENST00000487938 NDUFB10O96000 172 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 FAM153BP0C7A2 387 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 ALDH1B1P30837 517 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 EXOC3L4Q17RC7 722 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 FAM153CQ494X1 144 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 EMBQ6PCB8 327 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 NLGN1Q8N2Q7 840 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 IKZF4Q9H2S9 585 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 RNF14Q9UBS8 474 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 FAM153AQ9UHL3 310 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 EML1O00423 815 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 GCNT3O95395 438 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 XRCC5P13010 732 aaKnown RBP19.68■□□□□ 0.74
VIM-206ENST00000487938 ZNF76P36508 570 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 TRADDQ15628 312 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 ABCB5Q2M3G0 1257 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 GLE1Q53GS7 698 aaKnown RBP19.68■□□□□ 0.74
VIM-206ENST00000487938 SYDE2Q5VT97 1194 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 IFT20Q8IY31 132 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 SPICE1Q8N0Z3 855 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 RBM46Q8TBY0 533 aaKnown RBP19.68■□□□□ 0.74
VIM-206ENST00000487938 ZNF622Q969S3 477 aaKnown RBP eCLIP19.68■□□□□ 0.743e-17■□□□□ 9.6
VIM-206ENST00000487938 ARL8AQ96BM9 186 aa19.68■□□□□ 0.74
VIM-206ENST00000487938 TBX3O15119 743 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 CALUO43852 315 aaPredicted RBP19.67■□□□□ 0.74
VIM-206ENST00000487938 POLD1P28340 1107 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 SREBF1P36956 1147 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 NOP2P46087 812 aaKnown RBP19.67■□□□□ 0.74
VIM-206ENST00000487938 TATDN1Q6P1N9 297 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 GJB7Q6PEY0 223 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 PIGOQ8TEQ8 1089 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 GDF3Q9NR23 364 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 AJAP1Q9UKB5 411 aaPredicted RBP19.67■□□□□ 0.74
VIM-206ENST00000487938 PCDHB13Q9Y5F0 798 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 ANKRD31Q8N7Z5 1873 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 ANKRD65E5RJM6 399 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 PDXKO00764 312 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 OPLAHO14841 1288 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 HSF2BPO75031 334 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 DNAJC21Q5F1R6 531 aaKnown RBP19.67■□□□□ 0.74
VIM-206ENST00000487938 TMEM179Q6ZVK1 233 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 PODNQ7Z5L7 613 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 CAVIN3Q969G5 261 aa19.67■□□□□ 0.74
VIM-206ENST00000487938 EIF2AK1Q9BQI3 630 aaKnown RBP19.67■□□□□ 0.74
VIM-206ENST00000487938 KCNK3O14649 394 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 NR3C1P04150 777 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 TNFRSF8P28908 595 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 CTTNQ14247 550 aaKnown RBP19.66■□□□□ 0.74
VIM-206ENST00000487938 TTC19Q6DKK2 380 aaPredicted RBP19.66■□□□□ 0.74
VIM-206ENST00000487938 KLHL7Q8IXQ5 586 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 FAM20AQ96MK3 541 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 INPP4AQ96PE3 977 aaPredicted RBP19.66■□□□□ 0.74
VIM-206ENST00000487938 ZIM3Q96PE6 472 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 RUFY1Q96T51 708 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 SH3GL2Q99962 352 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 RABEP2Q9H5N1 569 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 PLCB1Q9NQ66 1216 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 VAV3Q9UKW4 847 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 SIPA1L1O43166 1804 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 ASTN1O14525 1302 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 BRWD3Q6RI45 1802 aa19.66■□□□□ 0.74
VIM-206ENST00000487938 ZBTB39O15060 712 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 OPA1O60313 960 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 GH2P01242 217 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 GUCY2FP51841 1108 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 EPHA7Q15375 998 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 COL23A1Q86Y22 540 aaPredicted RBP19.65■□□□□ 0.74
VIM-206ENST00000487938 IDI2Q9BXS1 227 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 GOLGA8KD6RF30 607 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 TBCAO75347 108 aaKnown RBP19.65■□□□□ 0.74
VIM-206ENST00000487938 FOSP01100 380 aaPredicted RBP19.65■□□□□ 0.74
VIM-206ENST00000487938 BMP3P12645 472 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 RPS6KA1Q15418 735 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 KCTD19Q17RG1 926 aaPredicted RBP19.65■□□□□ 0.74
VIM-206ENST00000487938 TTMPQ5BVD1 217 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 ALS2CLQ60I27 953 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 PROCA1Q8NCQ7 364 aaPredicted RBP19.65■□□□□ 0.74
VIM-206ENST00000487938 CASKIN2Q8WXE0 1202 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 TAF4BQ92750 862 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 CCDC43Q96MW1 224 aaKnown RBP19.65■□□□□ 0.74
VIM-206ENST00000487938 TDRD3Q9H7E2 651 aaKnown RBP19.65■□□□□ 0.74
VIM-206ENST00000487938 TYW1Q9NV66 732 aaKnown RBP19.65■□□□□ 0.74
VIM-206ENST00000487938 NAGPAQ9UK23 515 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 RABGAP1Q9Y3P9 1069 aa19.65■□□□□ 0.74
VIM-206ENST00000487938 PPFIA4O75335 1185 aa19.64■□□□□ 0.74
VIM-206ENST00000487938 IRAK1P51617 712 aa19.64■□□□□ 0.74
VIM-206ENST00000487938 RRP1BQ14684 758 aaKnown RBP19.64■□□□□ 0.74
VIM-206ENST00000487938 ALKBH5Q6P6C2 394 aaKnown RBP19.64■□□□□ 0.74
VIM-206ENST00000487938 ATAD5Q96QE3 1844 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 A0A1W2PRG0 241 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 RAD51CO43502 376 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 CHMP2AO43633 222 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms