RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, human

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-215	ENST00000487620	C1orf131	Q8NDD1	294 aa	Known RBP	10.69	□□□□□ -0.7
ZNF3-215	ENST00000487620	RBM46	Q8TBY0	533 aa	Known RBP	10.69	□□□□□ -0.7
ZNF3-215	ENST00000487620	GRAPL	Q8TC17	118 aa	Predicted RBP	10.69	□□□□□ -0.7
ZNF3-215	ENST00000487620	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	10.69	□□□□□ -0.7
ZNF3-215	ENST00000487620	PAGR1	Q9BTK6	254 aa		10.69	□□□□□ -0.7
ZNF3-215	ENST00000487620	CD209	Q9NNX6	404 aa		10.69	□□□□□ -0.7
ZNF3-215	ENST00000487620	NFS1	Q9Y697	457 aa		10.69	□□□□□ -0.7
ZNF3-215	ENST00000487620	CNTNAP4	Q9C0A0	1308 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	GMNC	A6NCL1	334 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	BTNL10	A8MVZ5	291 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	USP17L10	C9JJH3	530 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	MEIS1	O00470	390 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	TTI1	O43156	1089 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	MED24	O75448	989 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	FLOT1	O75955	427 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	XRCC5	P13010	732 aa	Known RBP	10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	PON1	P27169	355 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	EDRF1	Q3B7T1	1238 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	ARSH	Q5FYA8	562 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	CCDC121	Q6ZUS5	278 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	PTF1A	Q7RTS3	328 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	CCDC13	Q8IYE1	715 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	TPCN2	Q8NHX9	752 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	NCAPG	Q9BPX3	1015 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	CELF4	Q9BZC1	486 aa	Known RBP	10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	TRIM31	Q9BZY9	425 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	DPH5	Q9H2P9	285 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	NOVA2	Q9UNW9	492 aa	Known RBP	10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	BZW2	Q9Y6E2	419 aa	Known RBP	10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	GCFC2	P16383	781 aa	Known RBP	10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	ZNF543	Q08ER8	600 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	HYI	Q5T013	277 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	GJB7	Q6PEY0	223 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	PPP4R3CP	Q6ZMV5	832 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	RUFY4	Q6ZNE9	571 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	CALR3	Q96L12	384 aa	Known RBP	10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	JPH2	Q9BR39	696 aa	Predicted RBP	10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	VCPKMT	Q9H867	229 aa		10.68	□□□□□ -0.7
ZNF3-215	ENST00000487620	COL24A1	Q17RW2	1714 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	GOLGA6L7	A0A1B0GV03	622 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	DCDC2C	A8MYV0	355 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	MPHOSPH10	O00566	681 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	TTLL1	O95922	423 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	NOV	P48745	357 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	PSMC6	P62333	389 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	GPSM2	P81274	684 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	ACTN3	Q08043	901 aa	Predicted RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	PABPC4	Q13310	644 aa	Known RBP eCLIP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	QPCT	Q16769	361 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	KRT71	Q3SY84	523 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	PPP1R18	Q6NYC8	613 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	VPS36	Q86VN1	386 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	AMIGO3	Q86WK7	504 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	SFR1	Q86XK3	245 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	U2AF1L4	Q8WU68	220 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	MYCBP	Q99417	103 aa	Predicted RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	DHX36	Q9H2U1	1008 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	GEMIN8	Q9NWZ8	242 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	DDX20	Q9UHI6	824 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	SLC12A6	Q9UHW9	1150 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	AJAP1	Q9UKB5	411 aa	Predicted RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	ZBTB5	O15062	677 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	RPS6KA4	O75676	772 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	H2AFZ	P0C0S5	128 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	SNHG28	P0DPA3	235 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	RFC4	P35249	363 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	SLC12A3	P55017	1021 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	MAGOH	P61326	146 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	PPP2R2A	P63151	447 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	DHX9	Q08211	1270 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	IFFO1	Q0D2I5	559 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	BIRC3	Q13489	604 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	MTMR3	Q13615	1198 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	KNOP1	Q1ED39	458 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	H2AFV	Q71UI9	128 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	FRMD5	Q7Z6J6	570 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	EIF1AD	Q8N9N8	165 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	CCDC26	Q8TAB7	109 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	LMBR1	Q8WVP7	490 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	MAGOHB	Q96A72	148 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	CD248	Q9HCU0	757 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	GCNT4	Q9P109	453 aa		10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	CNOT8	Q9UFF9	292 aa	Known RBP	10.67	□□□□□ -0.7
ZNF3-215	ENST00000487620	LOC102724159	A0A0B4J2E5	919 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620		F8W031	263 aa	Predicted RBP	10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	CCDC188	H7C350	402 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	CLIC2	O15247	247 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	TRAPPC3	O43617	180 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	ATP2C2	O75185	946 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	AKAP3	O75969	853 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	GFPT2	O94808	682 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	PRPF4B	Q13523	1007 aa	Known RBP	10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	PWP2	Q15269	919 aa	Known RBP	10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	DPY19L2P1	Q6NXN4	242 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	ADAT2	Q7Z6V5	191 aa	Known RBP	10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	ZC3H3	Q8IXZ2	948 aa	Known RBP	10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	ARHGEF1	Q92888	912 aa	Known RBP	10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	CCDC114	Q96M63	670 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	REEP2	Q9BRK0	252 aa		10.66	□□□□□ -0.7
ZNF3-215	ENST00000487620	UTP11	Q9Y3A2	253 aa	Known RBP	10.66	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms