RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, human

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-208	ENST00000486758	NUDT12	Q9BQG2	462 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	LZTS2	Q9BRK4	669 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SPATA31A5	Q5VU36	1347 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SPATA31A7	Q8IWB4	1347 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	ARFGEF2	Q9Y6D5	1785 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	ZNF263	O14978	683 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	ATP2B4	P23634	1241 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	MMP14	P50281	582 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	FUT2	Q10981	343 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	ZNF211	Q13398	564 aa	Predicted RBP	13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	MYCT1	Q8N699	235 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SPDL1	Q96EA4	605 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	PNMA2	Q9UL42	364 aa		13.44	□□□□□ -0.26
SHROOM3-208	ENST00000486758	NAIF1	Q69YI7	327 aa	Predicted RBP	13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SEC16B	Q96JE7	1060 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	PPP1R12C	Q9BZL4	782 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	INTS9	Q9NV88	658 aa	Known RBP	13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	L3MBTL1	Q9Y468	752 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	MYH2	Q9UKX2	1941 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TTLL1	O95922	423 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	FAM107A	O95990	144 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	ICA1	Q05084	483 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TTI2	Q6NXR4	508 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SH3RF1	Q7Z6J0	888 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	ADGRF4	Q8IZF3	695 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TRIM51	Q9BSJ1	452 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	YIPF3	Q9GZM5	350 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TSKS	Q9UJT2	592 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	MME	P08473	750 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	FAM83B	Q5T0W9	1011 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	DENND2C	Q68D51	928 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	AMIGO3	Q86WK7	504 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	KIF2B	Q8N4N8	673 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	PRPF38A	Q8NAV1	312 aa	Known RBP	13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SPATA20	Q8TB22	786 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TLR10	Q9BXR5	811 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	DNM3	Q9UQ16	869 aa		13.43	□□□□□ -0.26
SHROOM3-208	ENST00000486758	MYH13	Q9UKX3	1938 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	CENPF	P49454	3210 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	GJC1	P36383	396 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	RCAN1	P53805	252 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SESN3	P58005	492 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SEPT2	Q15019	361 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	IFI16	Q16666	785 aa	Known RBP	13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	WHAMM	Q8TF30	809 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SNX24	Q9Y343	169 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	GRIN2D	O15399	1336 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	PPEF1	O14829	653 aa	Predicted RBP	13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TTI1	O43156	1089 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SART1	O43290	800 aa	Known RBP	13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	ACTN1	P12814	892 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	PCK1	P35558	622 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	HSD17B3	P37058	310 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	PPP2R2A	P63151	447 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	GDAP1	Q8TB36	358 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	LRRC15	Q8TF66	581 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SALL4	Q9UJQ4	1053 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	DAGLA	Q9Y4D2	1042 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SLC8A1	P32418	973 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	NFIA	Q12857	509 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	FMNL3	Q8IVF7	1028 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TBC1D22A	Q8WUA7	517 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	MTA3	Q9BTC8	594 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	LRRC27	Q9C0I9	530 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	BHMT2	Q9H2M3	363 aa		13.42	□□□□□ -0.26
SHROOM3-208	ENST00000486758	LRRC10B	A6NIK2	292 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	LRRN2	O75325	713 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	MIGA2	Q7L4E1	593 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	VCPKMT	Q9H867	229 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SWAP70	Q9UH65	585 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SCN11A	Q9UI33	1791 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	KCP	Q6ZWJ8	1503 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	PGRMC1	O00264	195 aa	Known RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	FGG	P02679	453 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	PLA2G4B	P0C869	781 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	BIRC2	Q13490	618 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	CTTN	Q14247	550 aa	Known RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	CHADL	Q6NUI6	762 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	CCDC50	Q8IVM0	306 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	NEDD1	Q8NHV4	660 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	DUSP9	Q99956	384 aa	Known RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	NSRP1	Q9H0G5	558 aa	Known RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TBK1	Q9UHD2	729 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	DDX20	Q9UHI6	824 aa	Known RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	PLAGL2	Q9UPG8	496 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	KLHL29	Q96CT2	875 aa		13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	ARMCX3	Q9UH62	379 aa	Predicted RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758	TPX2	Q9ULW0	747 aa	Known RBP	13.41	□□□□□ -0.26
SHROOM3-208	ENST00000486758		A0A087X0T9	212 aa		13.4	□□□□□ -0.26
SHROOM3-208	ENST00000486758	FAM228B	P0C875	321 aa		13.4	□□□□□ -0.26
SHROOM3-208	ENST00000486758	FKBP3	Q00688	224 aa	Known RBP	13.4	□□□□□ -0.26
SHROOM3-208	ENST00000486758	QPCT	Q16769	361 aa		13.4	□□□□□ -0.26
SHROOM3-208	ENST00000486758	NAALADL2	Q58DX5	795 aa		13.4	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms