RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 TLE2Q04725 743 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 RESTQ13127 1097 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 PPFIA1Q13136 1202 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 SNX17Q15036 470 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 STK38Q15208 465 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 PTGISQ16647 500 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 XKR3Q5GH77 459 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 TAF2Q6P1X5 1199 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 SLC43A3Q8NBI5 491 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 MAFAQ8NHW3 353 aaPredicted RBP9.27□□□□□ -0.93
SF3A1-208ENST00000485618 KCNG4Q8TDN1 519 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 ATP8B4Q8TF62 1192 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 CDK5RAP3Q96JB5 506 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 UIMC1Q96RL1 719 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 CDX2Q99626 313 aaPredicted RBP9.27□□□□□ -0.93
SF3A1-208ENST00000485618 TUFT1Q9NNX1 390 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 TMEM39AQ9NV64 488 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 VAV3Q9UKW4 847 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 PCDHB6Q9Y5E3 794 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 MAFBQ9Y5Q3 323 aaPredicted RBP9.27□□□□□ -0.93
SF3A1-208ENST00000485618 COL1A2P08123 1366 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 DDX11L8A8MPP1 907 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 HAS3O00219 553 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 CAND2O75155 1236 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 OATP04181 439 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 CLTBP09497 229 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 SMIM10L2AP0DMW4 78 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 SMIM10L2BP0DMW5 78 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 MARK3P27448 753 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 LONP1P36776 959 aaKnown RBP9.26□□□□□ -0.93
SF3A1-208ENST00000485618 UBA7P41226 1012 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 PSMC6P62333 389 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 KRT85P78386 507 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 ATP2C1P98194 919 aaPredicted RBP9.26□□□□□ -0.93
SF3A1-208ENST00000485618 PTK7Q13308 1070 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 CSPP1Q1MSJ5 1256 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 FAM43BQ6ZT52 329 aaPredicted RBP9.26□□□□□ -0.93
SF3A1-208ENST00000485618 SH3RF1Q7Z6J0 888 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 TPH2Q8IWU9 490 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 C4orf19Q8IY42 314 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 NME8Q8N427 588 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 RASSF8Q8NHQ8 419 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 CAGE1Q8TC20 777 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 MYLIPQ8WY64 445 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 KAT2BQ92831 832 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 NACC1Q96RE7 527 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 POLR3CQ9BUI4 534 aaPredicted RBP9.26□□□□□ -0.93
SF3A1-208ENST00000485618 SCAND2PQ9GZW5 306 aaPredicted RBP9.26□□□□□ -0.93
SF3A1-208ENST00000485618 BCAS3Q9H6U6 928 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 HDAC6Q9UBN7 1215 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 GTF2IRD1Q9UHL9 959 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 MORC2Q9Y6X9 1032 aaPredicted RBP9.26□□□□□ -0.93
SF3A1-208ENST00000485618 KDM3AQ9Y4C1 1321 aa9.26□□□□□ -0.93
SF3A1-208ENST00000485618 VWA3AA6NCI4 1184 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 TRIM43BA6NCK2 446 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 M0QZ92 97 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 YEATS4O95619 227 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 BRD1O95696 1058 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 RAG1P15918 1043 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 NCLP19338 710 aaKnown RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 PTGS1P23219 599 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 RPA1P27694 616 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 IRX5P78411 483 aaPredicted RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 SMAD3P84022 425 aaKnown RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 SLC39A14Q15043 492 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 GRIK4Q16099 956 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 FOXD4L5Q5VV16 416 aaPredicted RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 IER5Q5VY09 327 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 B3GNT9Q6UX72 402 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 FAM126BQ8IXS8 530 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 RPUSD2Q8IZ73 545 aaKnown RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 C4orf32Q8N8J7 132 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 KRI1Q8N9T8 703 aaKnown RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 FOXD4L4Q8WXT5 416 aaPredicted RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 SLC7A3Q8WY07 619 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 TRIM43Q96BQ3 446 aaPredicted RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 CALML4Q96GE6 196 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 RNPC3Q96LT9 517 aaKnown RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 EIF2AK1Q9BQI3 630 aaKnown RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 NIFKQ9BYG3 293 aaKnown RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 NT5C3AQ9H0P0 336 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 TMEM60Q9H2L4 133 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 RNPEPQ9H4A4 650 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 ANKEF1Q9NU02 776 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 CCDC39Q9UFE4 941 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 DNM3Q9UQ16 869 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 RBM19Q9Y4C8 960 aaKnown RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 KAT6AQ92794 2004 aa9.25□□□□□ -0.93
SF3A1-208ENST00000485618 SPTBN5Q9NRC6 3674 aaKnown RBP9.25□□□□□ -0.93
SF3A1-208ENST00000485618 PITPNM1O00562 1244 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 KIAA0355O15063 1070 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 SPTLC2O15270 562 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 GAS2O43903 313 aaKnown RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 PPP6R2O75170 966 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 SLITRK3O94933 977 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 LYPLA2O95372 231 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 INSRRP14616 1297 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 FOSL2P15408 326 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 YWHABP31946 246 aaKnown RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 RFC2P35250 354 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms