RNA–Protein interactions for RNA: ENST00000482590.1

CLK1-212, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 626 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-212ENST00000482590 RNF4P78317 190 aa8.18□□□□□ -1.1
CLK1-212ENST00000482590 AMPD3Q01432 767 aa8.18□□□□□ -1.1
CLK1-212ENST00000482590 SERINC3Q13530 473 aa8.18□□□□□ -1.1
CLK1-212ENST00000482590 CEP128Q6ZU80 1094 aa8.18□□□□□ -1.1
CLK1-212ENST00000482590 ZNF655Q8N720 491 aaPredicted RBP8.18□□□□□ -1.1
CLK1-212ENST00000482590 DACT3Q96B18 629 aaPredicted RBP8.18□□□□□ -1.1
CLK1-212ENST00000482590 RPS6KC1Q96S38 1066 aa8.18□□□□□ -1.1
CLK1-212ENST00000482590 BRIP1Q9BX63 1249 aa8.18□□□□□ -1.1
CLK1-212ENST00000482590 TAOK3Q9H2K8 898 aa8.18□□□□□ -1.1
CLK1-212ENST00000482590 CAMTA2O94983 1202 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 SDHBP21912 280 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 VIPR1P32241 457 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 PIP4K2AP48426 406 aaPredicted RBP8.17□□□□□ -1.1
CLK1-212ENST00000482590 PCBP3P57721 371 aaKnown RBP8.17□□□□□ -1.1
CLK1-212ENST00000482590 HTRA3P83110 453 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 SNW1Q13573 536 aaKnown RBP8.17□□□□□ -1.1
CLK1-212ENST00000482590 NBPF9Q3BBW0 867 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 BBS9Q3SYG4 887 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 ARSHQ5FYA8 562 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 NBPF12Q5TAG4 269 aaPredicted RBP8.17□□□□□ -1.1
CLK1-212ENST00000482590 ZPBP2Q6X784 338 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 NBPF5PQ86XG9 351 aaPredicted RBP8.17□□□□□ -1.1
CLK1-212ENST00000482590 PNISRQ8TF01 805 aaKnown RBP8.17□□□□□ -1.1
CLK1-212ENST00000482590 JDP2Q8WYK2 163 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 PHACTR3Q96KR7 559 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 CNTD2Q9H8S5 307 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 SIRT5Q9NXA8 310 aa8.17□□□□□ -1.1
CLK1-212ENST00000482590 KCNQ3O43525 872 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 SNRPA1P09661 255 aaKnown RBP8.16□□□□□ -1.1
CLK1-212ENST00000482590 PPP2R1AP30153 589 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 PRELPP51888 382 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 RACK1P63244 317 aaKnown RBP8.16□□□□□ -1.1
CLK1-212ENST00000482590 YBX1P67809 324 aaKnown RBP8.16□□□□□ -1.1
CLK1-212ENST00000482590 PWP1Q13610 501 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 STYK1Q6J9G0 422 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 CLEC4GQ6UXB4 293 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 MCM10Q7L590 875 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 ADAMTSL1Q8N6G6 1762 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 DNAJC5GQ8N7S2 189 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 MASTLQ96GX5 879 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 C8orf48Q96LL4 319 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 RNPC3Q96LT9 517 aaKnown RBP8.16□□□□□ -1.1
CLK1-212ENST00000482590 XYLT2Q9H1B5 865 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 EPB41L4AQ9HCS5 686 aaPredicted RBP8.16□□□□□ -1.1
CLK1-212ENST00000482590 LTBP3Q9NS15 1303 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 RTEL1Q9NZ71 1219 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 PNMA2Q9UL42 364 aa8.16□□□□□ -1.1
CLK1-212ENST00000482590 PRAMEF22A3QJZ6 481 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 N4BP3O15049 544 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 TLR3O15455 904 aaKnown RBP8.15□□□□□ -1.1
CLK1-212ENST00000482590 FKTNO75072 461 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 SYPP08247 313 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 SRGNP10124 158 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 RAG1P15918 1043 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 PNLIPP16233 465 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 CCDC93Q567U6 631 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 CKAP2LQ8IYA6 745 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.15□□□□□ -1.11e-8■□□□□ 10.6
CLK1-212ENST00000482590 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.15□□□□□ -1.1
CLK1-212ENST00000482590 NIP7Q9Y221 180 aaKnown RBP eCLIP8.15□□□□□ -1.1
CLK1-212ENST00000482590 USP16Q9Y5T5 823 aa8.15□□□□□ -1.1
CLK1-212ENST00000482590 MAPK8IP3Q9UPT6 1336 aa8.14□□□□□ -1.11
CLK1-212ENST00000482590 SSU72P8A0A1W2PR75 194 aa8.14□□□□□ -1.11
CLK1-212ENST00000482590 HTATSF1O43719 755 aaKnown RBP8.14□□□□□ -1.11
CLK1-212ENST00000482590 PRAMEF1O95521 474 aa8.14□□□□□ -1.11
CLK1-212ENST00000482590 AFF3P51826 1226 aaKnown RBP8.14□□□□□ -1.11
CLK1-212ENST00000482590 DCTN1Q14203 1278 aa8.14□□□□□ -1.11
CLK1-212ENST00000482590 ZNF394Q53GI3 561 aa8.14□□□□□ -1.11
CLK1-212ENST00000482590 JMYQ8N9B5 988 aa8.14□□□□□ -1.11
CLK1-212ENST00000482590 GMIPQ9P107 970 aa8.14□□□□□ -1.11
CLK1-212ENST00000482590 JAG2Q9Y219 1238 aa8.14□□□□□ -1.11
CLK1-212ENST00000482590 DDX60Q8IY21 1712 aaKnown RBP8.14□□□□□ -1.11
CLK1-212ENST00000482590 IQCA1LA6NCM1 817 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 IRS4O14654 1257 aaPredicted RBP8.13□□□□□ -1.11
CLK1-212ENST00000482590 NPR1P16066 1061 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 SYN1P17600 705 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 ATF4P18848 351 aaPredicted RBP8.13□□□□□ -1.11
CLK1-212ENST00000482590 POLR2BP30876 1174 aaKnown RBP8.13□□□□□ -1.11
CLK1-212ENST00000482590 RTP1P59025 263 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 ERVFRD-1P60508 538 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 FOXD4Q12950 439 aaPredicted RBP8.13□□□□□ -1.11
CLK1-212ENST00000482590 KIR3DS1Q14943 382 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 FBXL19Q6PCT2 694 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 KIF6Q6ZMV9 814 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 C11orf96Q7Z7L8 435 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 BRMS1Q9HCU9 246 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 GNL3LQ9NVN8 582 aaKnown RBP8.13□□□□□ -1.11
CLK1-212ENST00000482590 KBTBD4Q9NVX7 518 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 MINPP1Q9UNW1 487 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 PCDHB14Q9Y5E9 798 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 TAF1P21675 1872 aa8.13□□□□□ -1.11
CLK1-212ENST00000482590 OTOL1A6NHN0 477 aaPredicted RBP8.12□□□□□ -1.11
CLK1-212ENST00000482590 DDNO94850 711 aaPredicted RBP8.12□□□□□ -1.11
CLK1-212ENST00000482590 ATE1O95260 518 aa8.12□□□□□ -1.11
CLK1-212ENST00000482590 GJA8P48165 433 aa8.12□□□□□ -1.11
CLK1-212ENST00000482590 CDR1P51861 262 aa8.12□□□□□ -1.11
CLK1-212ENST00000482590 TAF7Q15545 349 aaPredicted RBP8.12□□□□□ -1.11
CLK1-212ENST00000482590 CWF19L2Q2TBE0 894 aaKnown RBP8.12□□□□□ -1.11
CLK1-212ENST00000482590 OVOS1Q6IE37 1185 aa8.12□□□□□ -1.11
CLK1-212ENST00000482590 USP48Q86UV5 1035 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms