RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 BTBD7Q9P203 1132 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 CDC42EP3Q9UKI2 254 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 AOAHP28039 575 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 IL13RA1P78552 427 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 USP10Q14694 798 aaKnown RBP6.86□□□□□ -1.31
VPS50-213ENST00000477572 ZC3H12BQ5HYM0 836 aaKnown RBP6.86□□□□□ -1.31
VPS50-213ENST00000477572 SOGA3Q5TF21 947 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 IFNL2Q8IZJ0 200 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 IGSF22Q8N9C0 903 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 DVL3Q92997 716 aaPredicted RBP6.86□□□□□ -1.31
VPS50-213ENST00000477572 MKL1Q969V6 931 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 LMF1Q96S06 567 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 KATNBL1Q9H079 304 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 DEF6Q9H4E7 631 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 GALNT8Q9NY28 637 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 MYRFQ9Y2G1 1151 aa6.86□□□□□ -1.31
VPS50-213ENST00000477572 TCRBV16S1A1N1A0A5B0 115 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 CLASP2O75122 1294 aaKnown RBP6.85□□□□□ -1.31
VPS50-213ENST00000477572 RAPGEF3O95398 923 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 APPP05067 770 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 POLD1P28340 1107 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 KCNQ1P51787 676 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 TOP3AQ13472 1001 aaPredicted RBP6.85□□□□□ -1.31
VPS50-213ENST00000477572 C2orf27AQ580R0 203 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 DPP8Q6V1X1 898 aaPredicted RBP6.85□□□□□ -1.31
VPS50-213ENST00000477572 SPRED1Q7Z699 444 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 NOSTRINQ8IVI9 506 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 WWC2-AS2Q96NR7 200 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 AMNQ9BXJ7 453 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 CARD11Q9BXL7 1154 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 KLC2Q9H0B6 622 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 OSBPL2Q9H1P3 480 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 CD248Q9HCU0 757 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 SLC4A7Q9Y6M7 1214 aa6.85□□□□□ -1.31
VPS50-213ENST00000477572 MPIG6BO95866 241 aa6.84□□□□□ -1.31
VPS50-213ENST00000477572 KCNA6P17658 529 aa6.84□□□□□ -1.31
VPS50-213ENST00000477572 TMEM132BQ14DG7 1078 aa6.84□□□□□ -1.31
VPS50-213ENST00000477572 TRIM61Q5EBN2 209 aa6.84□□□□□ -1.31
VPS50-213ENST00000477572 OVCH1Q7RTY7 1134 aa6.84□□□□□ -1.31
VPS50-213ENST00000477572 REXO1L1PQ8IX06 675 aa6.84□□□□□ -1.31
VPS50-213ENST00000477572 JMYQ8N9B5 988 aa6.84□□□□□ -1.31
VPS50-213ENST00000477572 GIMAP8Q8ND71 665 aaPredicted RBP6.84□□□□□ -1.31
VPS50-213ENST00000477572 DNERQ8NFT8 737 aa6.84□□□□□ -1.31
VPS50-213ENST00000477572 SH3RF3Q8TEJ3 882 aaPredicted RBP6.84□□□□□ -1.31
VPS50-213ENST00000477572 ERCC4Q92889 916 aaPredicted RBP6.84□□□□□ -1.31
VPS50-213ENST00000477572 C1QTNF3Q9BXJ4 246 aa6.84□□□□□ -1.31
VPS50-213ENST00000477572 CELF4Q9BZC1 486 aaKnown RBP6.84□□□□□ -1.31
VPS50-213ENST00000477572 CDK11AQ9UQ88 783 aaPredicted RBP6.84□□□□□ -1.31
VPS50-213ENST00000477572 PRAMEF22A3QJZ6 481 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 RASSF10A6NK89 507 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 MATN3O15232 486 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 FOXS1O43638 330 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 ZNF623O75123 536 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 KRT37O76014 449 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 CD83Q01151 205 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 CDSNQ15517 529 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 RNF151Q2KHN1 245 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 TCTN3Q6NUS6 607 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 OTOP2Q7RTS6 562 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 TAX1BP1Q86VP1 789 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 C2orf69Q8N8R5 385 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 HIPK4Q8NE63 616 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 ASB15Q8WXK1 588 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 CLUHP3Q96NS8 147 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 GBP4Q96PP9 640 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 MRPL4Q9BYD3 311 aaKnown RBP6.83□□□□□ -1.32
VPS50-213ENST00000477572 KIAA1683Q9H0B3 1180 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 KANSL2Q9H9L4 492 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 NCOA5Q9HCD5 579 aaKnown RBP6.83□□□□□ -1.32
VPS50-213ENST00000477572 TRIM39Q9HCM9 518 aa6.83□□□□□ -1.32
VPS50-213ENST00000477572 SLC12A8A0AV02 714 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 TNFRSF1AP19438 455 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 HERVK_113P62684 666 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 ZNF568Q3ZCX4 644 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 TMEM177Q53S58 311 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 LARP4Q71RC2 724 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS50-213ENST00000477572 WDR48Q8TAF3 677 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 Q8TCH9 128 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 SREK1Q8WXA9 508 aaKnown RBP6.82□□□□□ -1.32
VPS50-213ENST00000477572 NEIL1Q96FI4 390 aaPredicted RBP6.82□□□□□ -1.32
VPS50-213ENST00000477572 DPYSL5Q9BPU6 564 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 ZDHHC5Q9C0B5 715 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 TMPRSS5Q9H3S3 457 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 KCNH7Q9NS40 1196 aa6.82□□□□□ -1.32
VPS50-213ENST00000477572 PATE3B3GLJ2 98 aa6.81□□□□□ -1.32
VPS50-213ENST00000477572 FOXP2O15409 715 aa6.81□□□□□ -1.32
VPS50-213ENST00000477572 HMGCRP04035 888 aa6.81□□□□□ -1.32
VPS50-213ENST00000477572 ECE1P42892 770 aa6.81□□□□□ -1.32
VPS50-213ENST00000477572 TBR1Q16650 682 aa6.81□□□□□ -1.32
VPS50-213ENST00000477572 ZSWIM4Q9H7M6 989 aa6.81□□□□□ -1.32
VPS50-213ENST00000477572 SEC61A2Q9H9S3 476 aa6.81□□□□□ -1.32
VPS50-213ENST00000477572 CUTAO60888 179 aa6.8□□□□□ -1.32
VPS50-213ENST00000477572 ETV4P43268 484 aa6.8□□□□□ -1.32
VPS50-213ENST00000477572 RAC3P60763 192 aa6.8□□□□□ -1.32
VPS50-213ENST00000477572 IRF9Q00978 393 aa6.8□□□□□ -1.32
VPS50-213ENST00000477572 SQSTM1Q13501 440 aa6.8□□□□□ -1.32
VPS50-213ENST00000477572 WNK4Q96J92 1243 aa6.8□□□□□ -1.32
VPS50-213ENST00000477572 BTBD2Q9BX70 525 aa6.8□□□□□ -1.32
VPS50-213ENST00000477572 C12orf65Q9H3J6 166 aaKnown RBP6.8□□□□□ -1.32
VPS50-213ENST00000477572 NR2E1Q9Y466 385 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms