RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	CLSTN2	Q9H4D0	955 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	C1orf115	Q9H7X2	142 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	ANO10	Q9NW15	660 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	NOB1	Q9ULX3	412 aa	Known RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	CYP8B1	Q9UNU6	501 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	SMC3	Q9UQE7	1217 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	YBX2	Q9Y2T7	364 aa	Known RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	PIK3C2A	O00443	1686 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	SHPRH	Q149N8	1683 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	USP54	Q70EL1	1684 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	MAP2	P11137	1827 aa	Known RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	CPD	O75976	1380 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	GOLGA6L7	A0A1B0GV03	622 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	BECN2	A8MW95	431 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	LIN7A	O14910	233 aa	Predicted RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	AP5Z1	O43299	807 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	CBFA2T2	O43439	604 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZEB2	O60315	1214 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	SHOX2	O60902	331 aa	Predicted RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	KIAA0754	O94854	1291 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	GSPT1	P15170	499 aa	Known RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	CYP7A1	P22680	504 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	SFPQ	P23246	707 aa	Known RBP eCLIP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	AARS	P49588	968 aa	Known RBP eCLIP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	GALK1	P51570	392 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	CDR1	P51861	262 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	EVC	P57679	992 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZC3H6	P61129	1189 aa	Known RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	LRMP	Q12912	555 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	WIPI1	Q5MNZ9	446 aa	Predicted RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	MEX3C	Q5U5Q3	659 aa	Known RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	LRRC31	Q6UY01	552 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	TMC7	Q7Z402	723 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	LUZP1	Q86V48	1076 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	HOMER1	Q86YM7	354 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCDC170	Q8IYT3	715 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	LILRA2	Q8N149	483 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	MAB21L3	Q8N8X9	362 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	MSANTD4	Q8NCY6	345 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	C3orf20	Q8ND61	904 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCDC26	Q8TAB7	109 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	PIWIL2	Q8TC59	973 aa	Known RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	SSH1	Q8WYL5	1049 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	RUBCN	Q92622	972 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	P3H4	Q92791	437 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	COX4I2	Q96KJ9	171 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	PPP1R13B	Q96KQ4	1090 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	ANKRD27	Q96NW4	1050 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	DPH2	Q9BQC3	489 aa	Predicted RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	PRDM11	Q9NQV5	511 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	ST7	Q9NRC1	585 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	PDRG1	Q9NUG6	133 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	EBF1	Q9UH73	591 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	ODF2L	Q9ULJ1	636 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	LIMCH1	Q9UPQ0	1083 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	COL22A1	Q8NFW1	1626 aa	Predicted RBP	5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	SLIT3	O75094	1523 aa		5.32	□□□□□ -1.56
PTCD3-212	ENST00000477520	PNMA6F	A0A0J9YX94	578 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZBTB7C	A1YPR0	619 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	NEBL	O76041	1014 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	SNUPN	O95149	360 aa	Known RBP	5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	PECAM1	P16284	738 aa	Predicted RBP	5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	PI3	P19957	117 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	SDS	P20132	328 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	GSTT1	P30711	240 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	GRK4	P32298	578 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	EGR3	Q06889	387 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	SCRN1	Q12765	414 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	ANO6	Q4KMQ2	910 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	VPS53	Q5VIR6	699 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	TMED8	Q6PL24	325 aa	Predicted RBP	5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	ARHGEF25	Q86VW2	580 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	CEP57L1	Q8IYX8	460 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	RPUSD2	Q8IZ73	545 aa	Known RBP	5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCHCR1	Q8TD31	782 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	AFAP1L1	Q8TED9	768 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	IP6K1	Q92551	441 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	HOOK2	Q96ED9	719 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	SAAL1	Q96ER3	474 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	DTNBP1	Q96EV8	351 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	RSRC1	Q96IZ7	334 aa	Known RBP	5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	OSBPL9	Q96SU4	736 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	TM6SF1	Q9BZW5	370 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	ACTR5	Q9H9F9	607 aa	Predicted RBP	5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	ATP6V0A4	Q9HBG4	840 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	CHCHD3	Q9NX63	227 aa	Known RBP	5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	VPS18	Q9P253	973 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	DUSP13	Q9UII6	198 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	CFAP45	Q9UL16	551 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	L1RE1	Q9UN81	338 aa		5.31	□□□□□ -1.56
PTCD3-212	ENST00000477520	FLT4	P35916	1363 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	KIAA0232	Q92628	1395 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	ABCC4	O15439	1325 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	MAP3K19	Q56UN5	1328 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	FITM1	A5D6W6	292 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	GOLGA6L10	A6NI86	522 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	ARHGAP6	O43182	974 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	PPFIA2	O75334	1257 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	URI1	O94763	535 aa	Predicted RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	SYT1	P21579	422 aa		5.3	□□□□□ -1.56

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