RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SYNPO2Q9UMS6 1093 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 ADAMTS5Q9UNA0 930 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 F5H6K3 240 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 H0YGN5 161 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 VWA5AO00534 786 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 TTLL1O95922 423 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 NDUFB10O96000 172 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 IGHDP01880 384 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 FCER1AP12319 257 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 FOSL1P15407 271 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 CCND3P30281 292 aaPredicted RBP8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 COPB2P35606 906 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 NUCB1Q02818 461 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 KLRC3Q07444 240 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 TMEM132BQ14DG7 1078 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 MCMDC2Q4G0Z9 681 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 OLFML2BQ68BL8 750 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 B4GALNT3Q6L9W6 998 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 CHD1LQ86WJ1 897 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 NPLOC4Q8TAT6 608 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 DIS3LQ8TF46 1054 aaKnown RBP8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 MKL1Q969V6 931 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 RILPL2Q969X0 211 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 CEP95Q96GE4 821 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 PAWRQ96IZ0 340 aaKnown RBP8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 SPACA7Q96KW9 195 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 SLF1Q9BQI6 1058 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 MTMR4Q9NYA4 1195 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 FLRT1Q9NZU1 646 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 OGDHLQ9ULD0 1010 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 SUPT16HQ9Y5B9 1047 aaKnown RBP8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 NR2E3Q9Y5X4 410 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 LAMA4Q16363 1823 aa8.05□□□□□ -1.12
CCDC88A-213ENST00000476903 SMCHD1A6NHR9 2005 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 MEGF11A6BM72 1044 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 A6NJR5 290 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 TSPY2A6NKD2 308 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 FOXP2O15409 715 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 SART1O43290 800 aaKnown RBP8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 MSCO60682 206 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 STAT3P40763 770 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 TFAP4Q01664 338 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 ALX1Q15699 326 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 FAM47AQ5JRC9 791 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 VPS53Q5VIR6 699 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 FAM117BQ6P1L5 589 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 RIOX2Q8IUF8 465 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 LRRC47Q8N1G4 583 aaKnown RBP8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 GMCL1P1Q8NEA9 526 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 WNT8BQ93098 351 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 FAM227BQ96M60 508 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 MMP19Q99542 508 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 NUP88Q99567 741 aaPredicted RBP8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 C11orf49Q9H6J7 331 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 FBXO28Q9NVF7 368 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 ANAPC4Q9UJX5 808 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 DNAH12Q6ZR08 3092 aa8.04□□□□□ -1.12
CCDC88A-213ENST00000476903 ZMYM6O95789 1325 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 MCM3APO60318 1980 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 A0A0D9SFI3 127 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 H3BRJ5 948 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 IGHA2P01877 340 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 CYBAP13498 195 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 BRD2P25440 801 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 MAP4P27816 1152 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 CNGA1P29973 690 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 CYP2C19P33261 490 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 MFAP1P55081 439 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 NMIQ13287 307 aaPredicted RBP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 KCTD2Q14681 263 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 SGO2Q562F6 1265 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 HABP4Q5JVS0 413 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 PRPF38AQ8NAV1 312 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 REPS2Q8NFH8 660 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 TEX13BQ9BXU2 312 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 OSGEPQ9NPF4 335 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 DDX20Q9UHI6 824 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 FEM1BQ9UK73 627 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 ZNF214Q9UL59 606 aaPredicted RBP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 CTDP1Q9Y5B0 961 aaPredicted RBP8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 CCDC171Q6TFL3 1326 aa8.03□□□□□ -1.12
CCDC88A-213ENST00000476903 HIP1O00291 1037 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 ATP2A1O14983 1001 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 ORC4O43929 436 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 RANBP6O60518 1105 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 ZBED4O75132 1171 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 FGAP02671 866 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 HSPD1P10809 573 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 SDSP20132 328 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 SCNN1AP37088 669 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 SLC1A4P43007 532 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 OCLNQ16625 522 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 HGSNATQ68CP4 663 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 SLFN13Q68D06 897 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 SNRNP48Q6IEG0 339 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 ZNF589Q86UQ0 364 aaPredicted RBP8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 PIK3R5Q8WYR1 880 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 ASIC4Q96FT7 647 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 MAML3Q96JK9 1138 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms