RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 RIN2Q8WYP3 895 aaPredicted RBP15.07■□□□□ 0
CCDC88A-211ENST00000471947 HAUS4Q9H6D7 363 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 ARHGAP20Q9P2F6 1191 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 MRFAP1Q9Y605 127 aa15.07■□□□□ 0
CCDC88A-211ENST00000471947 ESYT2A0FGR8 921 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 SMIM23A6NLE4 172 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 KCNK3O14649 394 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 EDIL3O43854 480 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 ENTPD3O75355 529 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 BIRC3Q13489 604 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 PADI6Q6TGC4 694 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 RUFY1Q96T51 708 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 FAM107BQ9H098 131 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 PARVGQ9HBI0 331 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 SEPT9Q9UHD8 586 aaPredicted RBP15.06■□□□□ 0
CCDC88A-211ENST00000471947 CAPN11Q9UMQ6 739 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 DDX60Q8IY21 1712 aaKnown RBP15.06■□□□□ 0
CCDC88A-211ENST00000471947 EFCAB8A8MWE9 144 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 IGBP1P78318 339 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 EPC2Q52LR7 807 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 PPP4R3AQ6IN85 833 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 ZNF526Q8TF50 670 aaPredicted RBP15.06■□□□□ 0
CCDC88A-211ENST00000471947 COG1Q8WTW3 980 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 OGFRQ9NZT2 677 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 ANKFY1Q9P2R3 1169 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 TNRC6CQ9HCJ0 1690 aaKnown RBP15.06■□□□□ 0
CCDC88A-211ENST00000471947 HIP1RO75146 1068 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 AKAP3O75969 853 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 RPL13P26373 211 aaKnown RBP15.06■□□□□ 0
CCDC88A-211ENST00000471947 NF2P35240 595 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 VSNL1P62760 191 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 CEP170P1Q96L14 293 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 NUP58Q9BVL2 599 aa15.06■□□□□ 0
CCDC88A-211ENST00000471947 HERC5Q9UII4 1024 aaKnown RBP15.06■□□□□ 0
CCDC88A-211ENST00000471947 PVALEFA0A1B0GWK0 134 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 CALUO43852 315 aaPredicted RBP15.05■□□□□ 0
CCDC88A-211ENST00000471947 USP11P51784 963 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 GIT2Q14161 759 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 KNOP1Q1ED39 458 aaKnown RBP15.05■□□□□ 0
CCDC88A-211ENST00000471947 LONRF2Q1L5Z9 754 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 ARSHQ5FYA8 562 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 NLGN2Q8NFZ4 835 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 UHMK1Q8TAS1 419 aaKnown RBP15.05■□□□□ 0
CCDC88A-211ENST00000471947 ANKRD7Q92527 254 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 DNAJC19Q96DA6 116 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 CCDC51Q96ER9 411 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 SCLT1Q96NL6 688 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 PNKPQ96T60 521 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 POP1Q99575 1024 aaKnown RBP15.05■□□□□ 0
CCDC88A-211ENST00000471947 AP1M1Q9BXS5 423 aa15.05■□□□□ 0
CCDC88A-211ENST00000471947 REXO2Q9Y3B8 237 aaKnown RBP15.05■□□□□ 0
CCDC88A-211ENST00000471947 DDNO94850 711 aaPredicted RBP15.05■□□□□ -0
CCDC88A-211ENST00000471947 SNHG28P0DPA3 235 aa15.05■□□□□ -0
CCDC88A-211ENST00000471947 OTUD5Q96G74 571 aa15.05■□□□□ -0
CCDC88A-211ENST00000471947 RIPK3Q9Y572 518 aa15.05■□□□□ -0
CCDC88A-211ENST00000471947 MAP2K1Q02750 393 aaPredicted RBP15.05■□□□□ -0
CCDC88A-211ENST00000471947 AP3B2Q13367 1082 aa15.05■□□□□ -0
CCDC88A-211ENST00000471947 MIIPQ5JXC2 388 aa15.05■□□□□ -0
CCDC88A-211ENST00000471947 RINT1Q6NUQ1 792 aa15.05■□□□□ -0
CCDC88A-211ENST00000471947 SWSAP1Q6NVH7 229 aa15.05■□□□□ -0
CCDC88A-211ENST00000471947 PRPF38AQ8NAV1 312 aaKnown RBP15.05■□□□□ -0
CCDC88A-211ENST00000471947 C4AP0C0L4 1744 aa15.05■□□□□ -0
CCDC88A-211ENST00000471947 IGKV6D-41A0A0C4DH26 115 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 hCG_1984214I3L0E3 225 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 CENPPQ6IPU0 288 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 SND1Q7KZF4 910 aaKnown RBP eCLIP15.04■□□□□ -0
CCDC88A-211ENST00000471947 ZNF713Q8N859 430 aaPredicted RBP15.04■□□□□ -0
CCDC88A-211ENST00000471947 GLT8D2Q9H1C3 349 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 TMOD4Q9NZQ9 345 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 TMX2Q9Y320 296 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 ROBO3Q96MS0 1386 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 C4BP0C0L5 1744 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 LRRIQ4A6NIV6 560 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 ATP9AO75110 1047 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 PRELPP51888 382 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 MAP3K9P80192 1104 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 GPS2Q13227 327 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 COL20A1Q9P218 1284 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 A0A087X0T9 212 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 ANKRD65E5RJM6 399 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 N4BP1O75113 896 aaKnown RBP15.04■□□□□ -0
CCDC88A-211ENST00000471947 FAM228BP0C875 321 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 TNFAIP1Q13829 316 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 SMC1AQ14683 1233 aaKnown RBP15.04■□□□□ -0
CCDC88A-211ENST00000471947 GLYCTKQ8IVS8 523 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 CAMKK2Q96RR4 588 aa15.04■□□□□ -0
CCDC88A-211ENST00000471947 LUC7LQ9NQ29 371 aaKnown RBP15.04■□□□□ -0
CCDC88A-211ENST00000471947 NID2Q14112 1375 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 ANKRD36CQ5JPF3 1778 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 KLRG2A4D1S0 409 aaPredicted RBP15.03■□□□□ -0
CCDC88A-211ENST00000471947 PALMO75781 387 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 AFPP02771 609 aaKnown RBP15.03■□□□□ -0
CCDC88A-211ENST00000471947 SPATA31C1P0DKV0 1188 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 COPB2P35606 906 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 LRRC63Q05C16 580 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 ZSWIM2Q8NEG5 633 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 CTNNBL1Q8WYA6 563 aaPredicted RBP15.03■□□□□ -0
CCDC88A-211ENST00000471947 ZNF446Q9NWS9 450 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 GABBR1Q9UBS5 961 aa15.03■□□□□ -0
CCDC88A-211ENST00000471947 SLITRK3O94933 977 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms