RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 EIF2AK1Q9BQI3 630 aaKnown RBP22.2■■□□□ 1.14
COL9A3-204ENST00000463487 LXNQ9BS40 222 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 LRWD1Q9UFC0 647 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 ATP6V1DQ9Y5K8 247 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 PDE4DIPQ5VU43 2346 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 H0YGN5 161 aa22.19■■□□□ 1.14
COL9A3-204ENST00000463487 PITPNM1O00562 1244 aa22.19■■□□□ 1.14
COL9A3-204ENST00000463487 TIMP1P01033 207 aa22.19■■□□□ 1.14
COL9A3-204ENST00000463487 CYP2C9P11712 490 aa22.19■■□□□ 1.14
COL9A3-204ENST00000463487 UGCGQ16739 394 aa22.19■■□□□ 1.14
COL9A3-204ENST00000463487 FOXD4L5Q5VV16 416 aaPredicted RBP22.19■■□□□ 1.14
COL9A3-204ENST00000463487 OTUD6AQ7L8S5 288 aa22.19■■□□□ 1.14
COL9A3-204ENST00000463487 TRMT1LQ7Z2T5 733 aaKnown RBP22.19■■□□□ 1.14
COL9A3-204ENST00000463487 RSPH3Q86UC2 560 aa22.19■■□□□ 1.14
COL9A3-204ENST00000463487 SERINC5Q86VE9 423 aa22.19■■□□□ 1.14
COL9A3-204ENST00000463487 FOXD4L4Q8WXT5 416 aaPredicted RBP22.19■■□□□ 1.14
COL9A3-204ENST00000463487 TRIM43BA6NCK2 446 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 TREHO43280 583 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 CAND2O75155 1236 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 CYP4A11Q02928 519 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 ATL3Q6DD88 541 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 SH3RF1Q7Z6J0 888 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 TPH2Q8IWU9 490 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 C4orf19Q8IY42 314 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 TMEM199Q8N511 208 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 TRIM43Q96BQ3 446 aaPredicted RBP22.18■■□□□ 1.14
COL9A3-204ENST00000463487 DYDC2Q96IM9 177 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 CCDC43Q96MW1 224 aaKnown RBP22.18■■□□□ 1.14
COL9A3-204ENST00000463487 NOC4LQ9BVI4 516 aaKnown RBP22.18■■□□□ 1.14
COL9A3-204ENST00000463487 PPP1R12CQ9BZL4 782 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 TUFT1Q9NNX1 390 aa22.18■■□□□ 1.14
COL9A3-204ENST00000463487 SEPT9Q9UHD8 586 aaPredicted RBP22.18■■□□□ 1.14
COL9A3-204ENST00000463487 DDX11L8A8MPP1 907 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 MAGEB2O15479 319 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 ZNF862O60290 1169 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 ATP4AP20648 1035 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 MUTP22033 750 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 KRT79Q5XKE5 535 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 EXOC8Q8IYI6 725 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 IGSF22Q8N9C0 903 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 AK8Q96MA6 479 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 POLR3CQ9BUI4 534 aaPredicted RBP22.17■■□□□ 1.14
COL9A3-204ENST00000463487 RGL1Q9NZL6 768 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 PPME1Q9Y570 386 aa22.17■■□□□ 1.14
COL9A3-204ENST00000463487 WDR81Q562E7 1941 aa22.16■■□□□ 1.14
COL9A3-204ENST00000463487 MBLAC1A4D2B0 266 aaPredicted RBP22.16■■□□□ 1.14
COL9A3-204ENST00000463487 PARNO95453 639 aaKnown RBP22.16■■□□□ 1.14
COL9A3-204ENST00000463487 ADAM17P78536 824 aa22.16■■□□□ 1.14
COL9A3-204ENST00000463487 ZNF200P98182 395 aaPredicted RBP22.16■■□□□ 1.14
COL9A3-204ENST00000463487 RBL2Q08999 1139 aa22.16■■□□□ 1.14
COL9A3-204ENST00000463487 PRPF38BQ5VTL8 546 aaKnown RBP22.16■■□□□ 1.14
COL9A3-204ENST00000463487 FAM173BQ6P4H8 233 aa22.16■■□□□ 1.14
COL9A3-204ENST00000463487 HSD17B14Q9BPX1 270 aa22.16■■□□□ 1.14
COL9A3-204ENST00000463487 JPH2Q9BR39 696 aaPredicted RBP22.16■■□□□ 1.14
COL9A3-204ENST00000463487 CFAP45Q9UL16 551 aa22.16■■□□□ 1.14
COL9A3-204ENST00000463487 DNAH12Q6ZR08 3092 aa22.16■■□□□ 1.14
COL9A3-204ENST00000463487 VWA3AA6NCI4 1184 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 SLITRK3O94933 977 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 LYPLA2O95372 231 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 RPA1P27694 616 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 TMOD1P28289 359 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 YWHABP31946 246 aaKnown RBP22.15■■□□□ 1.14
COL9A3-204ENST00000463487 NUCB2P80303 420 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 TBC1D8BQ0IIM8 1120 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 CTTNQ14247 550 aaKnown RBP22.15■■□□□ 1.14
COL9A3-204ENST00000463487 MFSD5Q6N075 450 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 NIFKQ9BYG3 293 aaKnown RBP22.15■■□□□ 1.14
COL9A3-204ENST00000463487 PCDHA2Q9Y5H9 948 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 CLIC4Q9Y696 253 aa22.15■■□□□ 1.14
COL9A3-204ENST00000463487 KDM3AQ9Y4C1 1321 aa22.14■■□□□ 1.14
COL9A3-204ENST00000463487 SMIM35A0A1B0GVV1 85 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 M0QZ92 97 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 BRD1O95696 1058 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 SELPP16109 830 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 KLRC1P26715 233 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 RFC2P35250 354 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 LONP1P36776 959 aaKnown RBP22.14■■□□□ 1.13
COL9A3-204ENST00000463487 THPOP40225 353 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 CCT6AP40227 531 aaKnown RBP22.14■■□□□ 1.13
COL9A3-204ENST00000463487 CEBPZQ03701 1054 aaKnown RBP22.14■■□□□ 1.13
COL9A3-204ENST00000463487 FPGSQ05932 587 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 PKP1Q13835 747 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 HIC1Q14526 733 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 STK38Q15208 465 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 MARCH8Q5T0T0 291 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 MTHFD1LQ6UB35 978 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 SNX29Q8TEQ0 813 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 BADQ92934 168 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 CTAGE1Q96RT6 745 aa22.14■■□□□ 1.13
COL9A3-204ENST00000463487 MORC2Q9Y6X9 1032 aaPredicted RBP22.14■■□□□ 1.13
COL9A3-204ENST00000463487 CKBP12277 381 aa22.13■■□□□ 1.13
COL9A3-204ENST00000463487 XRCC6P12956 609 aaKnown RBP eCLIP22.13■■□□□ 1.13
COL9A3-204ENST00000463487 CYP2C18P33260 490 aa22.13■■□□□ 1.13
COL9A3-204ENST00000463487 PPIGQ13427 754 aaKnown RBP eCLIP22.13■■□□□ 1.133e-23■■■□□ 15.4
COL9A3-204ENST00000463487 MTERF2Q49AM1 385 aa22.13■■□□□ 1.13
COL9A3-204ENST00000463487 LRRC8DQ7L1W4 858 aa22.13■■□□□ 1.13
COL9A3-204ENST00000463487 RPAINQ86UA6 219 aa22.13■■□□□ 1.13
COL9A3-204ENST00000463487 CATSPER3Q86XQ3 398 aa22.13■■□□□ 1.13
COL9A3-204ENST00000463487 TRAPPC12Q8WVT3 735 aa22.13■■□□□ 1.13
COL9A3-204ENST00000463487 CEP170P1Q96L14 293 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms