RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	MSH4	O15457	936 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	CACNB3	P54284	484 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	IRX3	P78415	501 aa	Predicted RBP	9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L24	Q0WX57	530 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	CDC37	Q16543	378 aa	Predicted RBP	9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	MCTP2	Q6DN12	878 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L6P	Q6QN14	398 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	POTEB	Q6S5H4	581 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	FRMD5	Q7Z6J6	570 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	MYOCD	Q8IZQ8	938 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	ZC3H15	Q8WU90	426 aa	Known RBP	9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	SLC5A5	Q92911	643 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	LRRC27	Q9C0I9	530 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	PANK4	Q9NVE7	773 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	EML1	O00423	815 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	SLC1A4	P43007	532 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	C1orf186	Q6ZWK4	172 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP50	Q70EL3	339 aa	Predicted RBP	9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	TRIM58	Q8NG06	486 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	RANBP17	Q9H2T7	1088 aa	Known RBP	9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	GPCPD1	Q9NPB8	672 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	ADARB2	Q9NS39	739 aa	Known RBP	9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	ADAMTS5	Q9UNA0	930 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	GRIN2D	O15399	1336 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	ANK1	P16157	1881 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	KRT86	O43790	486 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	MUT	P22033	750 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	ARHGAP4	P98171	946 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	POU5F1	Q01860	360 aa	Known RBP	9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	LRRC41	Q15345	812 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	SLC18A3	Q16572	532 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	FAM83B	Q5T0W9	1011 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	SAMD7	Q7Z3H4	446 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	EIF1AD	Q8N9N8	165 aa	Known RBP	9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	IPO4	Q8TEX9	1081 aa	Known RBP	9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	TMEM39B	Q9GZU3	492 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	KANSL2	Q9H9L4	492 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	SLC16A3	O15427	465 aa	Known RBP	9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	GNA14	O95837	355 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	SERPING1	P05155	500 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	ANXA13	P27216	316 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	STAT3	P40763	770 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	GFPT1	Q06210	699 aa	Predicted RBP	9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	MAPK7	Q13164	816 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	DYM	Q7RTS9	669 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	SPATA4	Q8NEY3	305 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	FAM71B	Q8TC56	605 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	MED4	Q9NPJ6	270 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	PCDHA12	Q9UN75	941 aa		9.67	□□□□□ -0.86
SYNE1-215	ENST00000460912	GRID2IP	A4D2P6	1211 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912		F8W031	263 aa	Predicted RBP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	DDN	O94850	711 aa	Predicted RBP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	MRPL12	P52815	198 aa	Known RBP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	FAM26F	Q5R3K3	315 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	TMEM179	Q6ZVK1	233 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	OTOP1	Q7RTM1	612 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	SLFN12	Q8IYM2	578 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	RASGEF1C	Q8N431	466 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	FAM20A	Q96MK3	541 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	TMX4	Q9H1E5	349 aa	Predicted RBP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	DMGDH	Q9UI17	866 aa	Known RBP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	FAM184B	Q9ULE4	1060 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	PASK	Q96RG2	1323 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	PDXK	O00764	312 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	MOCS3	O95396	460 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	NDUFB10	O96000	172 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	CAPN2	P17655	700 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	TRIM21	P19474	475 aa	Known RBP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	PON1	P27169	355 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	KRT79	Q5XKE5	535 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	SCFD2	Q8WU76	684 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	SLC35C1	Q96A29	364 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	REEP2	Q9BRK0	252 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	NUCKS1	Q9H1E3	243 aa	Known RBP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	VAT1L	Q9HCJ6	419 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	UNCX	A6NJT0	531 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	GRIN3B	O60391	1043 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	GYS2	P54840	703 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	HNRNPH2	P55795	449 aa	Known RBP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	NNT	Q13423	1086 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	TMEM266	Q2M3C6	531 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	KCNN1	Q92952	543 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	C12orf42	Q96LP6	360 aa		9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912	MAGEC2	Q9UBF1	373 aa	Predicted RBP	9.66	□□□□□ -0.86
SYNE1-215	ENST00000460912		A0A087X0T9	212 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	POTEF	A5A3E0	1075 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	EIF3D	O15371	548 aa	Known RBP eCLIP	9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	AKAP3	O75969	853 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	FAM228B	P0C875	321 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	POTEI	P0CG38	1075 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	CAP2	P40123	477 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	EIF6	P56537	245 aa	Known RBP	9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	PICALM	Q13492	652 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	DLGAP5	Q15398	846 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	NFRKB	Q6P4R8	1299 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	POTEG	Q6S5H5	508 aa		9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	ZNF571	Q7Z3V5	609 aa	Predicted RBP	9.65	□□□□□ -0.86
SYNE1-215	ENST00000460912	JDP2	Q8WYK2	163 aa		9.65	□□□□□ -0.86

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