RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 TYW1Q9NV66 732 aaKnown RBP6.73□□□□□ -1.33
VPS13D-202ENST00000460333 AMFRQ9UKV5 643 aa6.73□□□□□ -1.33
VPS13D-202ENST00000460333 STXBP3O00186 592 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 KRIT1O00522 736 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 TXKP42681 527 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 COG7P83436 770 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 ZNF543Q08ER8 600 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 KLHL30Q0D2K2 578 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 CUL3Q13618 768 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 DACT2Q5SW24 774 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 TYW1BQ6NUM6 668 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 FAM160B2Q86V87 743 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 PBKQ96KB5 322 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 FAM210AQ96ND0 272 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 AS3MTQ9HBK9 375 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 MRPL11Q9Y3B7 192 aaKnown RBP6.72□□□□□ -1.33
VPS13D-202ENST00000460333 CLRN2A0PK11 232 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 TMEM232C9JQI7 657 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 ECM2O94769 699 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-202ENST00000460333 PDHBP11177 359 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 DPEP1P16444 411 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 RANBP1P43487 201 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 AP3B2Q13367 1082 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 PKN1Q16512 942 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 MAP7D1Q3KQU3 841 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 SYDE2Q5VT97 1194 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 PPP1R21Q6ZMI0 780 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 BBOF1Q8ND07 529 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 ZNF384Q8TF68 577 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 FAM151AQ8WW52 585 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 CAMKK2Q96RR4 588 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 DNAI2Q9GZS0 605 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 EPB41L5Q9HCM4 733 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 ZNF277Q9NRM2 450 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-202ENST00000460333 IL17RBQ9NRM6 502 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 SOWAHDA6NJG2 315 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 TXNDC9O14530 226 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 NDUFA10O95299 355 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 EEF2P13639 858 aaKnown RBP6.72□□□□□ -1.33
VPS13D-202ENST00000460333 RPS12P25398 132 aaKnown RBP6.72□□□□□ -1.33
VPS13D-202ENST00000460333 ACTN3Q08043 901 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-202ENST00000460333 DHX40Q8IX18 779 aaKnown RBP6.72□□□□□ -1.33
VPS13D-202ENST00000460333 TBCKQ8TEA7 893 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 ZMYND12Q9H0C1 365 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 STOML1Q9UBI4 398 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 ANKRD65E5RJM6 399 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 SART1O43290 800 aaKnown RBP6.72□□□□□ -1.33
VPS13D-202ENST00000460333 ASNSP08243 561 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 SLC8A3P57103 927 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 E4F1Q66K89 784 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-202ENST00000460333 ARHGEF18Q6ZSZ5 1173 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 KCTD1Q719H9 257 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 GRK7Q8WTQ7 553 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 BICD1Q96G01 975 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 FUCA2Q9BTY2 467 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 MXD3Q9BW11 206 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 NOD1Q9Y239 953 aa6.72□□□□□ -1.33
VPS13D-202ENST00000460333 CCDC88AQ3V6T2 1871 aa6.71□□□□□ -1.33
VPS13D-202ENST00000460333 GDF11O95390 407 aa6.71□□□□□ -1.33
VPS13D-202ENST00000460333 CACNB3P54284 484 aa6.71□□□□□ -1.33
VPS13D-202ENST00000460333 C2orf54Q08AI8 447 aa6.71□□□□□ -1.33
VPS13D-202ENST00000460333 GRIK5Q16478 980 aa6.71□□□□□ -1.33
VPS13D-202ENST00000460333 APOBEC3HQ6NTF7 200 aaKnown RBP6.71□□□□□ -1.33
VPS13D-202ENST00000460333 DDX25Q9UHL0 483 aaKnown RBP6.71□□□□□ -1.33
VPS13D-202ENST00000460333 PCDHA6Q9UN73 950 aa6.71□□□□□ -1.33
VPS13D-202ENST00000460333 PCDHA8Q9Y5H6 950 aa6.71□□□□□ -1.33
VPS13D-202ENST00000460333 LY75O60449 1722 aa6.71□□□□□ -1.33
VPS13D-202ENST00000460333 KCNK3O14649 394 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 GAS8O95995 478 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 GH2P01242 217 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 HSPA6P17066 643 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 TNFAIP3P21580 790 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 STAT2P52630 851 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 ITIH3Q06033 890 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 ADCY2Q08462 1091 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 MYO1EQ12965 1108 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 CDC37Q16543 378 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-202ENST00000460333 CFAP157Q5JU67 520 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 FBXW10Q5XX13 1052 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 ANKRD42Q8N9B4 389 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 RASGRP4Q8TDF6 673 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 SNX29Q8TEQ0 813 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 ATP6V1G3Q96LB4 118 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 ANKRD27Q96NW4 1050 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 RIC8AQ9NPQ8 531 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 GINM1Q9NU53 330 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 STK17AQ9UEE5 414 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 SYNPO2Q9UMS6 1093 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 DAAM1Q9Y4D1 1078 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 RNF8O76064 485 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 TBC1D8O95759 1140 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 EPB41P11171 864 aaKnown RBP6.71□□□□□ -1.34
VPS13D-202ENST00000460333 PDE6CP51160 858 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 C10orf76Q5T2E6 689 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 SWT1Q5T5J6 900 aaKnown RBP6.71□□□□□ -1.34
VPS13D-202ENST00000460333 C6orf118Q5T5N4 469 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 LGSNQ5TDP6 509 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 NCAPH2Q6IBW4 605 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 ARMCX5Q6P1M9 558 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 RRAGAQ7L523 313 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms