RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 GGPS1O95749 300 aa11.53□□□□□ -0.56
USP39-210ENST00000459775 TXNP10599 105 aaKnown RBP11.53□□□□□ -0.56
USP39-210ENST00000459775 MDM2Q00987 491 aaPredicted RBP11.53□□□□□ -0.56
USP39-210ENST00000459775 MCM6Q14566 821 aa11.53□□□□□ -0.56
USP39-210ENST00000459775 CCDC62Q6P9F0 684 aa11.53□□□□□ -0.56
USP39-210ENST00000459775 MAMDC4Q6UXC1 1216 aa11.53□□□□□ -0.56
USP39-210ENST00000459775 MIER3Q7Z3K6 550 aa11.53□□□□□ -0.56
USP39-210ENST00000459775 HSD17B14Q9BPX1 270 aa11.53□□□□□ -0.56
USP39-210ENST00000459775 ARIH1Q9Y4X5 557 aaPredicted RBP11.53□□□□□ -0.56
USP39-210ENST00000459775 A0A1W2PPC1 479 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 SLFN14P0C7P3 912 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 ICAM3P32942 547 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 TXLNAP40222 546 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 RAD51AP2Q09MP3 1159 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 KIF22Q14807 665 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 ZRSR2Q15696 482 aaKnown RBP11.52□□□□□ -0.57
USP39-210ENST00000459775 HSDL1Q3SXM5 330 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 TRIB2Q92519 343 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 RAB34Q9BZG1 259 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 JPH1Q9HDC5 661 aaPredicted RBP11.52□□□□□ -0.57
USP39-210ENST00000459775 TBC1D22BQ9NU19 505 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 DNAH12Q6ZR08 3092 aa11.52□□□□□ -0.57
USP39-210ENST00000459775 NPHP3-ACAD11A0A0J9YXS1 232 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 STAM2O75886 525 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 FARP2O94887 1054 aaPredicted RBP11.51□□□□□ -0.57
USP39-210ENST00000459775 SSBP05455 408 aaKnown RBP eCLIP11.51□□□□□ -0.57
USP39-210ENST00000459775 RGS2P41220 211 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 ACTR2P61160 394 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 CUL4BQ13620 913 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 ACVR2BQ13705 512 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 CCDC144BQ3MJ40 725 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 GAS2L3Q86XJ1 694 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 CREBRFQ8IUR6 639 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 IQUBQ8NA54 791 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 PPP1R13LQ8WUF5 828 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 CALML4Q96GE6 196 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 CDK5RAP3Q96JB5 506 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 SLC9A2Q9UBY0 812 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 CCDC39Q9UFE4 941 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 DOCK5Q9H7D0 1870 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 LRRC37A2A6NM11 1700 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 HOXC6P09630 235 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 SMPD1P17405 629 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 RPA1P27694 616 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 CACNB1Q02641 598 aaPredicted RBP11.51□□□□□ -0.57
USP39-210ENST00000459775 UVSSAQ2YD98 709 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 PUS10Q3MIT2 529 aaKnown RBP11.51□□□□□ -0.57
USP39-210ENST00000459775 TMEM119Q4V9L6 283 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 SWSAP1Q6NVH7 229 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 ZNF467Q7Z7K2 595 aaPredicted RBP11.51□□□□□ -0.57
USP39-210ENST00000459775 TRIM50Q86XT4 487 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 TRPV1Q8NER1 839 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 APBA2Q99767 749 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 LXNQ9BS40 222 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 HTATIP2Q9BUP3 242 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 DIS3Q9Y2L1 958 aaKnown RBP11.51□□□□□ -0.57
USP39-210ENST00000459775 PCDHA5Q9Y5H7 936 aa11.51□□□□□ -0.57
USP39-210ENST00000459775 GSTTP1A0A1W2PQM5 241 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 ZNF865P0CJ78 1059 aaPredicted RBP11.5□□□□□ -0.57
USP39-210ENST00000459775 KCNA1Q09470 495 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 EPHA7Q15375 998 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 OLFML2BQ68BL8 750 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 CCDC60Q8IWA6 550 aaPredicted RBP11.5□□□□□ -0.57
USP39-210ENST00000459775 CEP57L1Q8IYX8 460 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 BORCS6Q96GS4 357 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 CDHR1Q96JP9 859 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 MLXIPQ9HAP2 919 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 BMP2KQ9NSY1 1161 aaPredicted RBP11.5□□□□□ -0.57
USP39-210ENST00000459775 SYNGAP1Q96PV0 1343 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 PLXNA1Q9UIW2 1896 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 KIAA1217Q5T5P2 1943 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 B4DLN1 442 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 H0YGN5 161 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 ZNF862O60290 1169 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 POSTNQ15063 836 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 CELF3Q5SZQ8 465 aaKnown RBP11.5□□□□□ -0.57
USP39-210ENST00000459775 DYMQ7RTS9 669 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 SH3RF1Q7Z6J0 888 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 ERMNQ8TAM6 284 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 RNF217Q8TC41 542 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 SCFD2Q8WU76 684 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 SOCS4Q8WXH5 440 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 RAD54LQ92698 747 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 HPS3Q969F9 1004 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 MAP7D2Q96T17 732 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 PCYT2Q99447 389 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 MPHOSPH6Q99547 160 aaKnown RBP11.5□□□□□ -0.57
USP39-210ENST00000459775 GABBR1Q9UBS5 961 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 PTCH2Q9Y6C5 1203 aa11.5□□□□□ -0.57
USP39-210ENST00000459775 MYMKA6NI61 221 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 WDR64B1ANS9 1081 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 KRT76Q01546 638 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 ARHGAP1Q07960 439 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 TTLL4Q14679 1199 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 PLA2G4FQ68DD2 849 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 ABHD15Q6UXT9 468 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 SREK1Q8WXA9 508 aaKnown RBP11.49□□□□□ -0.57
USP39-210ENST00000459775 SYAP1Q96A49 352 aaPredicted RBP11.49□□□□□ -0.57
USP39-210ENST00000459775 TIGD1Q96MW7 591 aa11.49□□□□□ -0.57
USP39-210ENST00000459775 SPATA33Q96N06 139 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms