RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 SCOCQ9UIL1 159 aa6.14□□□□□ -1.43
HMGB4-202ENST00000458277 HPCAL4Q9UM19 191 aa6.14□□□□□ -1.43
HMGB4-202ENST00000458277 R3HDM2Q9Y2K5 976 aaKnown RBP6.14□□□□□ -1.43
HMGB4-202ENST00000458277 LUC7L2Q9Y383 392 aaKnown RBP6.14□□□□□ -1.43
HMGB4-202ENST00000458277 RTCBQ9Y3I0 505 aaKnown RBP6.14□□□□□ -1.43
HMGB4-202ENST00000458277 NSD2O96028 1365 aa6.14□□□□□ -1.43
HMGB4-202ENST00000458277 ADGRL2O95490 1459 aa6.14□□□□□ -1.43
HMGB4-202ENST00000458277 SYCP2Q9BX26 1530 aa6.14□□□□□ -1.43
HMGB4-202ENST00000458277 FRMPD1Q5SYB0 1578 aa6.14□□□□□ -1.43
HMGB4-202ENST00000458277 MYO5CQ9NQX4 1742 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 TMEM247A6NEH6 219 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 FAM25EA8MYX2 175 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 SPECC1L-ADORA2AF8WAN1 911 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 SLC27A2O14975 620 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 N4BP3O15049 544 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 FIBPO43427 364 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ATP9BO43861 1147 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 CLASP2O75122 1294 aaKnown RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 LMNAP02545 664 aaKnown RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 U2AF1L5P0DN76 240 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ALADP13716 330 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ATP2A2P16615 1042 aaKnown RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 CDC27P30260 824 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 BUD31P41223 144 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 U2AF1Q01081 240 aaKnown RBP eCLIP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ITIH3Q06033 890 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 PDE4BQ07343 736 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 NSUN2Q08J23 767 aaKnown RBP eCLIP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 MAP3K12Q12852 859 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 TRIM29Q14134 588 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ZNF268Q14587 947 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ARHGEF6Q15052 776 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 NAA35Q5VZE5 725 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ARMC3Q5W041 872 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 NXNQ6DKJ4 435 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 NCAPH2Q6IBW4 605 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 GRAMD4Q6IC98 578 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 IRGCQ6NXR0 463 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 FAM117BQ6P1L5 589 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 FDX2Q6P4F2 183 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 CLEC4GQ6UXB4 293 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 NANOGNBQ7Z5D8 188 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ERICH1Q86X53 443 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 CROCCP3Q8IVE0 287 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 CACNA2D3Q8IZS8 1091 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 LARGE2Q8N3Y3 721 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 RNF10Q8N5U6 811 aaKnown RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ARL10Q8N8L6 244 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 SYT2Q8N9I0 419 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 SCAIQ8N9R8 606 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 CCDC63Q8NA47 563 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 KLHDC4Q8TBB5 520 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 CCDC110Q8TBZ0 833 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ACMSDQ8TDX5 336 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 FBF1Q8TES7 1133 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 SH3TC2Q8TF17 1288 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ZNF473Q8WTR7 871 aaKnown RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 CCDC12Q8WUD4 166 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 WDR60Q8WVS4 1066 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 USP6NLQ92738 828 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 KIFAP3Q92845 792 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 HVCN1Q96D96 273 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 EPSTI1Q96J88 318 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 CLIC6Q96NY7 704 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 OLFM3Q96PB7 478 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 NR1H4Q96RI1 486 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 NDNQ99608 321 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 SLC38A3Q99624 504 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 RTFDC1Q9BY42 306 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 RSPH9Q9H1X1 276 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ANKZF1Q9H8Y5 726 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 DDX21Q9NR30 783 aaKnown RBP eCLIP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 UBAP1Q9NZ09 502 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 TBC1D7Q9P0N9 293 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 SUCLA2Q9P2R7 463 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 SEL1LQ9UBV2 794 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ZMAT5Q9UDW3 170 aaKnown RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 PCSK1NQ9UHG2 260 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 BAIAP2L1Q9UHR4 511 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 DSEQ9UL01 958 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ZNF777Q9ULD5 760 aaPredicted RBP6.13□□□□□ -1.43
HMGB4-202ENST00000458277 FAM184BQ9ULE4 1060 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 LIMCH1Q9UPQ0 1083 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 PRELID1Q9Y255 219 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 PPP2R2CQ9Y2T4 447 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 C2CD2Q9Y426 696 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 C9orf84Q5VXU9 1444 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 POGZQ7Z3K3 1410 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 TRAPPC8Q9Y2L5 1435 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 ASXL1Q8IXJ9 1541 aa6.13□□□□□ -1.43
HMGB4-202ENST00000458277 IKBKBO14920 756 aa6.12□□□□□ -1.43
HMGB4-202ENST00000458277 GRIN2DO15399 1336 aa6.12□□□□□ -1.43
HMGB4-202ENST00000458277 IDH3BO43837 385 aa6.12□□□□□ -1.43
HMGB4-202ENST00000458277 SMARCA5O60264 1052 aaPredicted RBP6.12□□□□□ -1.43
HMGB4-202ENST00000458277 PFKFB2O60825 505 aa6.12□□□□□ -1.43
HMGB4-202ENST00000458277 HIP1RO75146 1068 aa6.12□□□□□ -1.43
HMGB4-202ENST00000458277 PHACTR2O75167 634 aa6.12□□□□□ -1.43
HMGB4-202ENST00000458277 TACC1O75410 805 aa6.12□□□□□ -1.43
HMGB4-202ENST00000458277 LGR5O75473 907 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms