RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PUM1Q14671 1186 aaKnown RBP eCLIP5.72□□□□□ -1.49
USP40-209ENST00000452724 CPZQ66K79 652 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 CDCA2Q69YH5 1023 aaPredicted RBP5.72□□□□□ -1.49
USP40-209ENST00000452724 ARHGEF18Q6ZSZ5 1173 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 EP400NLQ6ZTU2 488 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 KCTD1Q719H9 257 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.72□□□□□ -1.49
USP40-209ENST00000452724 RBM12BQ8IXT5 1001 aaKnown RBP5.72□□□□□ -1.49
USP40-209ENST00000452724 NLGN4XQ8N0W4 816 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 PPM1KQ8N3J5 372 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 KLHL36Q8N4N3 616 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 SH3RF2Q8TEC5 729 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 WNK4Q96J92 1243 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 SMURF1Q9HCE7 757 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 JADE2Q9NQC1 790 aa5.72□□□□□ -1.49
USP40-209ENST00000452724 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.72□□□□□ -1.49
USP40-209ENST00000452724 SBNO2Q9Y2G9 1366 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 NPEPPSL1A6NEC2 478 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 GSG1L2A8MUP6 293 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 PDE8AO60658 829 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 CHGBP05060 677 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 MASP1P48740 699 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 MECP2P51608 486 aaKnown RBP5.71□□□□□ -1.5
USP40-209ENST00000452724 EPHA5P54756 1037 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 GRIN1Q05586 938 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 PAN2Q504Q3 1202 aaKnown RBP5.71□□□□□ -1.5
USP40-209ENST00000452724 FIGNQ5HY92 759 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 FAM177A1Q8N128 213 aaPredicted RBP5.71□□□□□ -1.5
USP40-209ENST00000452724 C2orf69Q8N8R5 385 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 CLEC4DQ8WXI8 215 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 ZCCHC14Q8WYQ9 949 aaKnown RBP5.71□□□□□ -1.5
USP40-209ENST00000452724 C8orf49Q96NF6 230 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 KRTAP4-5Q9BYR2 181 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 CABP5Q9NP86 173 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 PRKAB1Q9Y478 270 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 TELO2Q9Y4R8 837 aa5.71□□□□□ -1.5
USP40-209ENST00000452724 CBX4O00257 560 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 KCNK3O14649 394 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 B4GALT3O60512 393 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 LTFP02788 710 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 ENO2P09104 434 aaPredicted RBP5.7□□□□□ -1.5
USP40-209ENST00000452724 FAHP16930 419 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 CANXP27824 592 aaKnown RBP5.7□□□□□ -1.5
USP40-209ENST00000452724 NFATC3Q12968 1075 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 SMAD2Q15796 467 aaKnown RBP5.7□□□□□ -1.5
USP40-209ENST00000452724 PKN3Q6P5Z2 889 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 ZNF662Q6ZS27 426 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 KBTBD2Q8IY47 623 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 AHI1Q8N157 1196 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 DTX3Q8N9I9 347 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 CHST14Q8NCH0 376 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 PDGFDQ9GZP0 370 aaPredicted RBP5.7□□□□□ -1.5
USP40-209ENST00000452724 MTFR1LQ9H019 292 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 TMX1Q9H3N1 280 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 MAPRE3Q9UPY8 281 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 ZDHHC9Q9Y397 364 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 ATP23Q9Y6H3 246 aa5.7□□□□□ -1.5
USP40-209ENST00000452724 SLC12A8A0AV02 714 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 TRAF5O00463 557 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 PPP2CBP62714 309 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 PPP2CAP67775 309 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 PCBP1Q15365 356 aaKnown RBP eCLIP5.69□□□□□ -1.5
USP40-209ENST00000452724 ARHGAP44Q17R89 818 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 OTOP1Q7RTM1 612 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 THNSL2Q86YJ6 484 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 DVL3Q92997 716 aaPredicted RBP5.69□□□□□ -1.5
USP40-209ENST00000452724 MBD6Q96DN6 1003 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 ORAI3Q9BRQ5 295 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 BOCQ9BWV1 1114 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 C1QTNF3Q9BXJ4 246 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 ARHGAP20Q9P2F6 1191 aa5.69□□□□□ -1.5
USP40-209ENST00000452724 PTPDC1A2A3K4 754 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 CLASP2O75122 1294 aaKnown RBP5.68□□□□□ -1.5
USP40-209ENST00000452724 ZNF20P17024 532 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 PTPN1P18031 435 aaKnown RBP5.68□□□□□ -1.5
USP40-209ENST00000452724 GJA4P35212 333 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 STAT3P40763 770 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 EPHB4P54760 987 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 SKIDA1Q1XH10 827 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 RNF187Q5TA31 235 aaPredicted RBP5.68□□□□□ -1.5
USP40-209ENST00000452724 BTBD8Q5XKL5 378 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 SLFN13Q68D06 897 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 FSTL4Q6MZW2 842 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 LIMS2Q7Z4I7 341 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 RALYLQ86SE5 291 aaKnown RBP5.68□□□□□ -1.5
USP40-209ENST00000452724 RNF180Q86T96 592 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 CIR1Q86X95 450 aaPredicted RBP5.68□□□□□ -1.5
USP40-209ENST00000452724 KIF18BQ86Y91 864 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 NOSTRINQ8IVI9 506 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 IFNL2Q8IZJ0 200 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 CHAC2Q8WUX2 184 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 LEO1Q8WVC0 666 aaPredicted RBP5.68□□□□□ -1.5
USP40-209ENST00000452724 CDK5RAP1Q96SZ6 601 aaKnown RBP5.68□□□□□ -1.5
USP40-209ENST00000452724 CAAP1Q9H8G2 361 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 RIC8BQ9NVN3 520 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 RBPJLQ9UBG7 517 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 B4GALT6Q9UBX8 382 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 ZFP69BQ9UJL9 534 aa5.68□□□□□ -1.5
USP40-209ENST00000452724 FAM90A27PA6NNH2 459 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 C1QTNF3-AMACRE9PGA6 284 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms