RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 ZEB2O60315 1214 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 EYA4O95677 639 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 CRKP46108 304 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 EXOC3L4Q17RC7 722 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 CERKLQ49MI3 558 aaPredicted RBP14.97□□□□□ -0.01
COL6A3-207ENST00000433762 IQCKQ8N0W5 287 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 USP38Q8NB14 1042 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 ATXN2Q99700 1313 aaKnown RBP14.97□□□□□ -0.01
COL6A3-207ENST00000433762 RBBP6Q7Z6E9 1792 aaKnown RBP14.97□□□□□ -0.01
COL6A3-207ENST00000433762 SPDYE3A6NKU9 549 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 JAM2P57087 298 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 CUL1Q13616 776 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 EPHA7Q15375 998 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 DNAJC21Q5F1R6 531 aaKnown RBP14.97□□□□□ -0.01
COL6A3-207ENST00000433762 FBXO11Q86XK2 927 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 FAM133AQ8N9E0 248 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 TUFT1Q9NNX1 390 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 SEL1LQ9UBV2 794 aa14.97□□□□□ -0.01
COL6A3-207ENST00000433762 POTEFA5A3E0 1075 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 CCDC188H7C350 402 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 HEXIM1O94992 359 aaKnown RBP14.96□□□□□ -0.01
COL6A3-207ENST00000433762 POTEIP0CG38 1075 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 PON1P27169 355 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 CXCR5P32302 372 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 CORO7P57737 925 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 POTEGQ6S5H5 508 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 POTEEQ6S8J3 1075 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 SLFN11Q7Z7L1 901 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 SYCE1Q8N0S2 351 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 ANKRD13CQ8N6S4 541 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 LRRC57Q8N9N7 239 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 SPAG5Q96R06 1193 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 REEP2Q9BRK0 252 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 CAPS2Q9BXY5 557 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 TMX4Q9H1E5 349 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-207ENST00000433762 VAV3Q9UKW4 847 aa14.96□□□□□ -0.01
COL6A3-207ENST00000433762 KIF4AO95239 1232 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 FERP16591 822 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 MAGEA9P43362 315 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 IRAK1P51617 712 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 RPS6KA1Q15418 735 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 SFR1Q86XK3 245 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 RIN2Q8WYP3 895 aaPredicted RBP14.96□□□□□ -0.02
COL6A3-207ENST00000433762 KCND2Q9NZV8 630 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 TBC1D7Q9P0N9 293 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 ADAMTS1Q9UHI8 967 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 NAGPAQ9UK23 515 aa14.96□□□□□ -0.02
COL6A3-207ENST00000433762 TNS1Q9HBL0 1735 aaKnown RBP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 RIMBP2O15034 1052 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 EIF3HO15372 352 aaKnown RBP eCLIP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 NR3C1P04150 777 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 HOXD13P35453 343 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 ICA1Q05084 483 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 PTK2Q05397 1052 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 PRR16Q569H4 304 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 STRIP1Q5VSL9 837 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 SYDE2Q5VT97 1194 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 LRIG3Q6UXM1 1119 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 SCFD2Q8WU76 684 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 DIS3Q9Y2L1 958 aaKnown RBP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 SLX4Q8IY92 1834 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 NPHP3-ACAD11A0A0J9YXS1 232 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 TBCAO75347 108 aaKnown RBP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 PDE6BP35913 854 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 HSPA9P38646 679 aaKnown RBP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 SLC7A5Q01650 507 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 NFIAQ12857 509 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 CFAP58Q5T655 872 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 ZNF571Q7Z3V5 609 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 SPATS2Q86XZ4 545 aaKnown RBP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 TSEN2Q8NCE0 465 aaKnown RBP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 ISCUQ9H1K1 167 aa14.95□□□□□ -0.02
COL6A3-207ENST00000433762 SUCLA2Q9P2R7 463 aaPredicted RBP14.95□□□□□ -0.02
COL6A3-207ENST00000433762 F8W031 263 aaPredicted RBP14.94□□□□□ -0.02
COL6A3-207ENST00000433762 PPP1R12BO60237 982 aaPredicted RBP14.94□□□□□ -0.02
COL6A3-207ENST00000433762 GLI1P08151 1106 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 MATR3P43243 847 aaKnown RBP eCLIP14.94□□□□□ -0.02
COL6A3-207ENST00000433762 CLUL1Q15846 466 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 KDM7AQ6ZMT4 941 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 STXBP4Q6ZWJ1 553 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 EFCAB13Q8IY85 973 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 NLGN1Q8N2Q7 840 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 RASGEF1CQ8N431 466 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 GJA10Q969M2 543 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 SLC35C1Q96A29 364 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 VTI1AQ96AJ9 217 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 BORCS6Q96GS4 357 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 GDAP1L1Q96MZ0 367 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 TRIM34Q9BYJ4 488 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 SERPINA10Q9UK55 444 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 TTC7AQ9ULT0 858 aaPredicted RBP14.94□□□□□ -0.02
COL6A3-207ENST00000433762 ASTN1O14525 1302 aa14.94□□□□□ -0.02
COL6A3-207ENST00000433762 F5H6K3 240 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 ENTPD3O75355 529 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 ZBTB48P10074 688 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-207ENST00000433762 RFX1P22670 979 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 STAT3P40763 770 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 SCNN1DP51172 638 aa14.93□□□□□ -0.02
COL6A3-207ENST00000433762 CASP5P51878 434 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms